Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   DQL75_RS02575 Genome accession   NZ_LS483317
Coordinates   509794..510390 (+) Length   198 a.a.
NCBI ID   WP_072509110.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NCTC5663     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 504794..515390
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL75_RS02545 (NCTC5663_00479) treR 505721..506449 (+) 729 WP_111761941.1 trehalose operon repressor -
  DQL75_RS02555 - 506850..506951 (+) 102 WP_014936987.1 hypothetical protein -
  DQL75_RS02560 (NCTC5663_00483) - 507090..507614 (+) 525 WP_111761942.1 GNAT family N-acetyltransferase -
  DQL75_RS02565 (NCTC5663_00484) dnaX 507683..509380 (+) 1698 WP_111761943.1 DNA polymerase III subunit gamma/tau -
  DQL75_RS02570 (NCTC5663_00485) - 509470..509787 (+) 318 WP_001213992.1 YbaB/EbfC family nucleoid-associated protein -
  DQL75_RS02575 (NCTC5663_00486) recR 509794..510390 (+) 597 WP_072509110.1 recombination mediator RecR Machinery gene
  DQL75_RS02580 - 510598..510694 (+) 97 Protein_495 hypothetical protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22046.46 Da        Isoelectric Point: 4.6640

>NTDB_id=1016596 DQL75_RS02575 WP_072509110.1 509794..510390(+) (recR) [Staphylococcus aureus strain NCTC5663]
MHYPEPISKLIDSFMKLPGIGPKTAQRLAFHTLDMKEDDVVQFAKALVDVKRELTYCSVCGHITENDPCYICEDKQRDCS
VICVVEDDKDVIAMEKMREYKGLYHVLHGSISPMDGIGPEDINIPSLIERLKNDEVSELILAMNPNLEGESTAMYISRLV
KPIGIKVTRLAQGLSVGGDLEYADEVTLSKAIAGRTEM

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1016596 DQL75_RS02575 WP_072509110.1 509794..510390(+) (recR) [Staphylococcus aureus strain NCTC5663]
ATGCATTATCCAGAACCTATATCAAAGCTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACG
TCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAAAGAGAAT
TAACATATTGTAGCGTATGTGGTCACATTACTGAAAATGATCCATGTTATATTTGTGAAGATAAGCAAAGAGATTGTTCA
GTTATTTGTGTTGTGGAAGATGACAAAGATGTCATAGCTATGGAAAAAATGAGAGAATACAAAGGTTTATATCACGTTTT
ACATGGGTCTATTTCGCCTATGGATGGAATTGGACCAGAAGATATTAATATTCCTTCATTGATTGAACGCTTGAAAAACG
ATGAAGTTAGCGAATTAATCTTAGCTATGAACCCGAACTTAGAGGGGGAATCTACAGCCATGTATATTTCTAGATTAGTT
AAGCCTATAGGTATCAAAGTGACGAGATTAGCACAAGGGTTATCGGTAGGTGGCGATTTAGAGTATGCTGACGAAGTAAC
ATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-171)

RecR protein (RecR_ZnF)

(40-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

77.273

100

0.773
  recR Streptococcus pneumoniae R6

64.141

100

0.641
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.205

98.485

0.475