Detailed information NTG1016532

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ABXU55_RS23485
• Genome accession: NZ_CP159885
• Coordinates: 5040496..5041368 (+)
• Length: 290 a.a.
• NCBI ID: WP_003116251.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain T117
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5035496..5046368

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABXU55_RS23465	-	5036039..5036737 (-)	699	WP_023121720.1	hypothetical protein	-
ABXU55_RS23470	-	5036801..5037340 (-)	540	WP_003116248.1	pilin	-
ABXU55_RS23475	pilB	5037569..5039272 (+)	1704	WP_003116249.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ABXU55_RS23480	pilC	5039276..5040493 (+)	1218	WP_003116250.1	type II secretion system F family protein	Machinery gene
ABXU55_RS23485	pilD	5040496..5041368 (+)	873	WP_003116251.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
ABXU55_RS23490	coaE	5041365..5041976 (+)	612	WP_003112838.1	dephospho-CoA kinase	-
ABXU55_RS23495	yacG	5041973..5042173 (+)	201	WP_003094656.1	DNA gyrase inhibitor YacG	-
ABXU55_RS23500	-	5042210..5042419 (-)	210	WP_003094660.1	hypothetical protein	-
ABXU55_RS23505	-	5042525..5043214 (-)	690	WP_003103868.1	energy-coupling factor ABC transporter permease	-
ABXU55_RS23510	-	5043211..5043681 (-)	471	WP_003094664.1	hypothetical protein	-
ABXU55_RS23515	-	5043678..5044103 (-)	426	WP_003116252.1	GNAT family N-acetyltransferase	-
ABXU55_RS23520	-	5044236..5044865 (+)	630	WP_003094668.1	DUF1780 domain-containing protein	-
ABXU55_RS23525	-	5044862..5045311 (+)	450	WP_003161439.1	MOSC domain-containing protein	-
ABXU55_RS23530	-	5045337..5045507 (+)	171	WP_003094672.1	DUF3094 family protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31871.89 Da
• Isoelectric Point: 7.3454

>NTDB_id=1016532 ABXU55_RS23485 WP_003116251.1 5040496..5041368(+) (pilD) [Pseudomonas aeruginosa strain T117]
MELLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=1016532 ABXU55_RS23485 WP_003116251.1 5040496..5041368(+) (pilD) [Pseudomonas aeruginosa strain T117]
ATGGAACTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCTATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.017	99.655	0.548
pilD	Vibrio campbellii strain DS40M4	53.497	98.621	0.528
pilD	Acinetobacter nosocomialis M2	50.352	97.931	0.493
pilD	Acinetobacter baumannii D1279779	50.352	97.931	0.493
pilD	Neisseria gonorrhoeae MS11	49.281	95.862	0.472