Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilG   Type   Regulator
Locus tag   ABYA78_RS02105 Genome accession   NZ_CP159883
Coordinates   451277..451684 (+) Length   135 a.a.
NCBI ID   WP_003084583.1    Uniprot ID   A0A0H2ZL28
Organism   Pseudomonas aeruginosa strain 100690     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context


Location: 446277..456684
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABYA78_RS02075 (ABYA78_02075) - 446325..447329 (-) 1005 WP_017148568.1 aspartate carbamoyltransferase catalytic subunit -
  ABYA78_RS02080 (ABYA78_02080) pyrR 447353..447865 (-) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  ABYA78_RS02085 (ABYA78_02085) ruvX 447977..448411 (-) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  ABYA78_RS02090 (ABYA78_02090) - 448411..448980 (-) 570 WP_003100947.1 YqgE/AlgH family protein -
  ABYA78_RS02095 (ABYA78_02095) - 449029..449922 (-) 894 WP_003162015.1 energy transducer TonB -
  ABYA78_RS02100 (ABYA78_02100) gshB 450069..451022 (-) 954 WP_003162014.1 glutathione synthase -
  ABYA78_RS02105 (ABYA78_02105) pilG 451277..451684 (+) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  ABYA78_RS02110 (ABYA78_02110) pilH 451731..452096 (+) 366 WP_003084587.1 twitching motility response regulator PilH -
  ABYA78_RS02115 (ABYA78_02115) - 452147..452683 (+) 537 WP_003084590.1 chemotaxis protein CheW -
  ABYA78_RS02120 (ABYA78_02120) pilJ 452768..454816 (+) 2049 WP_003084592.1 chemotaxis chemoreceptor PilJ -
  ABYA78_RS02125 (ABYA78_02125) pilK 454877..455752 (+) 876 WP_003100938.1 type 4 fimbrial methyltransferase PilK -

Sequence


Protein


Download         Length: 135 a.a.        Molecular weight: 14718.11 Da        Isoelectric Point: 7.1340

>NTDB_id=1016481 ABYA78_RS02105 WP_003084583.1 451277..451684(+) (pilG) [Pseudomonas aeruginosa strain 100690]
MEQQSDGLKVMVIDDSKTIRRTAETLLKKVGCDVITAIDGFDALAKIADTHPNIIFVDIMMPRLDGYQTCALIKNNSAFK
STPVIMLSSKDGLFDKAKGRIVGSDQYLTKPFSKEELLGAIKAHVPSFTPVDAVS

Nucleotide


Download         Length: 408 bp        

>NTDB_id=1016481 ABYA78_RS02105 WP_003084583.1 451277..451684(+) (pilG) [Pseudomonas aeruginosa strain 100690]
ATGGAACAGCAATCCGACGGTTTGAAAGTGATGGTGATCGACGATTCGAAAACGATTCGTCGCACCGCCGAAACACTGCT
GAAAAAGGTCGGTTGCGACGTGATCACGGCAATCGACGGCTTCGATGCCCTGGCGAAGATCGCCGATACCCATCCGAACA
TCATTTTCGTCGACATCATGATGCCGCGCCTGGATGGCTATCAGACCTGCGCCCTGATCAAGAACAACAGCGCGTTCAAG
TCCACCCCGGTGATCATGCTGTCCTCCAAGGACGGCCTGTTCGACAAGGCCAAGGGGCGCATCGTCGGCTCCGACCAGTA
CCTCACCAAGCCGTTCAGCAAGGAAGAGCTGCTGGGCGCGATCAAGGCACACGTACCCAGCTTCACCCCGGTGGACGCCG
TTTCCTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A0H2ZL28

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

74.803

94.074

0.704

  vicR Streptococcus mutans UA159

44.444

86.667

0.385


Multiple sequence alignment