Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | ABWJ01_RS24065 | Genome accession | NZ_CP159879 |
| Coordinates | 5044112..5044909 (+) | Length | 265 a.a. |
| NCBI ID | WP_014227970.1 | Uniprot ID | A0A0H3H8P5 |
| Organism | Klebsiella michiganensis strain 895358 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5039112..5049909
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABWJ01_RS24030 (ABWJ01_24030) | gspH | 5039253..5039765 (+) | 513 | WP_049083165.1 | type II secretion system minor pseudopilin GspH | - |
| ABWJ01_RS24035 (ABWJ01_24035) | gspI | 5039762..5040127 (+) | 366 | WP_009654631.1 | type II secretion system minor pseudopilin GspI | - |
| ABWJ01_RS24040 (ABWJ01_24040) | gspJ | 5040124..5040720 (+) | 597 | WP_046877781.1 | type II secretion system minor pseudopilin GspJ | - |
| ABWJ01_RS24045 (ABWJ01_24045) | gspK | 5040717..5041697 (+) | 981 | WP_049083163.1 | type II secretion system minor pseudopilin GspK | - |
| ABWJ01_RS24050 (ABWJ01_24050) | gspL | 5041690..5042883 (+) | 1194 | WP_049083162.1 | type II secretion system protein GspL | - |
| ABWJ01_RS24055 (ABWJ01_24055) | - | 5042876..5043361 (+) | 486 | WP_032748031.1 | type II secretion system protein M | - |
| ABWJ01_RS24060 (ABWJ01_24060) | - | 5043351..5044109 (+) | 759 | WP_049083160.1 | type II secretion system protein N | - |
| ABWJ01_RS24065 (ABWJ01_24065) | pilD | 5044112..5044909 (+) | 798 | WP_014227970.1 | A24 family peptidase | Machinery gene |
| ABWJ01_RS24070 (ABWJ01_24070) | hrpB | 5045004..5047433 (-) | 2430 | WP_049083158.1 | ATP-dependent helicase HrpB | - |
| ABWJ01_RS24075 (ABWJ01_24075) | thpR | 5047506..5048042 (+) | 537 | WP_014837425.1 | RNA 2',3'-cyclic phosphodiesterase | - |
| ABWJ01_RS24080 (ABWJ01_24080) | sfsA | 5048042..5048758 (+) | 717 | WP_004098690.1 | DNA/RNA nuclease SfsA | - |
| ABWJ01_RS24085 (ABWJ01_24085) | dksA | 5048923..5049378 (+) | 456 | WP_004098689.1 | RNA polymerase-binding protein DksA | - |
Sequence
Protein
Download Length: 265 a.a. Molecular weight: 29166.77 Da Isoelectric Point: 8.3358
>NTDB_id=1016472 ABWJ01_RS24065 WP_014227970.1 5044112..5044909(+) (pilD) [Klebsiella michiganensis strain 895358]
MENIALLPEFAAQYPSIWGGFLFLSGLAFGSFFNVVIHRLPLMMERAEGVNLCLPASFCPQCRQPIAWRDNIPLLSFLWL
RGRARCCGQPISRRYPLMELTTGALFVLAGYLMAPGMPLLGGLIFVSVLLILAAIDAQTQLLPDRLTLPLLWAGLLFNLS
DTFAPLAEAVIGAMVGYLSLWSVYWVFRLLTGKEALGYGDFKLLAALGAWLGWQPLPQTLLLASASGLVWTLLQRLVTRR
SLEQPLAFGPWLALAGGGIFLWSQV
MENIALLPEFAAQYPSIWGGFLFLSGLAFGSFFNVVIHRLPLMMERAEGVNLCLPASFCPQCRQPIAWRDNIPLLSFLWL
RGRARCCGQPISRRYPLMELTTGALFVLAGYLMAPGMPLLGGLIFVSVLLILAAIDAQTQLLPDRLTLPLLWAGLLFNLS
DTFAPLAEAVIGAMVGYLSLWSVYWVFRLLTGKEALGYGDFKLLAALGAWLGWQPLPQTLLLASASGLVWTLLQRLVTRR
SLEQPLAFGPWLALAGGGIFLWSQV
Nucleotide
Download Length: 798 bp
>NTDB_id=1016472 ABWJ01_RS24065 WP_014227970.1 5044112..5044909(+) (pilD) [Klebsiella michiganensis strain 895358]
ATGGAAAATATCGCGCTGTTACCCGAGTTCGCCGCGCAATACCCGTCAATCTGGGGCGGCTTTTTATTCCTGTCCGGACT
GGCGTTCGGCAGCTTTTTTAACGTCGTTATCCATCGTTTACCGCTGATGATGGAACGCGCAGAGGGGGTGAATCTCTGCC
TCCCCGCGTCGTTCTGCCCGCAGTGCCGTCAGCCTATCGCCTGGCGGGACAATATCCCGCTGCTGAGCTTTTTATGGCTC
AGGGGGCGCGCGCGCTGCTGCGGGCAGCCGATCTCGCGTCGCTATCCCCTGATGGAGCTGACGACCGGCGCGCTGTTTGT
ACTCGCGGGGTACCTGATGGCTCCGGGCATGCCGCTGCTGGGCGGGCTAATTTTCGTGTCCGTACTGCTGATCCTCGCCG
CCATCGACGCGCAAACGCAGCTGCTGCCTGACAGGCTGACGCTGCCGCTGCTGTGGGCCGGGCTGCTGTTCAATCTTTCC
GATACCTTCGCGCCGCTGGCGGAGGCGGTCATTGGCGCGATGGTCGGGTATTTGTCGCTGTGGTCGGTGTACTGGGTGTT
CCGTCTGCTGACCGGTAAAGAGGCGCTGGGCTACGGCGATTTCAAGCTGCTGGCGGCGCTCGGCGCGTGGCTCGGCTGGC
AGCCGCTGCCGCAGACGCTGCTGCTGGCTTCCGCCAGCGGTCTGGTCTGGACGCTGCTGCAGCGCCTGGTAACCCGTCGT
TCACTCGAACAACCTCTGGCCTTCGGCCCCTGGCTGGCGCTGGCGGGCGGCGGCATCTTTTTGTGGAGCCAGGTATAA
ATGGAAAATATCGCGCTGTTACCCGAGTTCGCCGCGCAATACCCGTCAATCTGGGGCGGCTTTTTATTCCTGTCCGGACT
GGCGTTCGGCAGCTTTTTTAACGTCGTTATCCATCGTTTACCGCTGATGATGGAACGCGCAGAGGGGGTGAATCTCTGCC
TCCCCGCGTCGTTCTGCCCGCAGTGCCGTCAGCCTATCGCCTGGCGGGACAATATCCCGCTGCTGAGCTTTTTATGGCTC
AGGGGGCGCGCGCGCTGCTGCGGGCAGCCGATCTCGCGTCGCTATCCCCTGATGGAGCTGACGACCGGCGCGCTGTTTGT
ACTCGCGGGGTACCTGATGGCTCCGGGCATGCCGCTGCTGGGCGGGCTAATTTTCGTGTCCGTACTGCTGATCCTCGCCG
CCATCGACGCGCAAACGCAGCTGCTGCCTGACAGGCTGACGCTGCCGCTGCTGTGGGCCGGGCTGCTGTTCAATCTTTCC
GATACCTTCGCGCCGCTGGCGGAGGCGGTCATTGGCGCGATGGTCGGGTATTTGTCGCTGTGGTCGGTGTACTGGGTGTT
CCGTCTGCTGACCGGTAAAGAGGCGCTGGGCTACGGCGATTTCAAGCTGCTGGCGGCGCTCGGCGCGTGGCTCGGCTGGC
AGCCGCTGCCGCAGACGCTGCTGCTGGCTTCCGCCAGCGGTCTGGTCTGGACGCTGCTGCAGCGCCTGGTAACCCGTCGT
TCACTCGAACAACCTCTGGCCTTCGGCCCCTGGCTGGCGCTGGCGGGCGGCGGCATCTTTTTGTGGAGCCAGGTATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
48.708 |
100 |
0.498 |
| pilD | Neisseria gonorrhoeae MS11 |
44.604 |
100 |
0.468 |
| pilD | Vibrio campbellii strain DS40M4 |
43.636 |
100 |
0.453 |
| pilD | Acinetobacter nosocomialis M2 |
44.788 |
97.736 |
0.438 |
| pilD | Acinetobacter baumannii D1279779 |
44.402 |
97.736 |
0.434 |