Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   DQL11_RS02220 Genome accession   NZ_LS483315
Coordinates   420048..421082 (+) Length   344 a.a.
NCBI ID   WP_031577431.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC12059     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 415048..426082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL11_RS02190 (NCTC12059_00433) tsaE 416113..416574 (+) 462 WP_009880751.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  DQL11_RS02195 (NCTC12059_00434) - 416549..417073 (+) 525 WP_031488468.1 GNAT family N-acetyltransferase -
  DQL11_RS02200 (NCTC12059_00435) brpA 417082..418365 (+) 1284 WP_111704550.1 biofilm formation/cell division transcriptional regulator BrpA -
  DQL11_RS02205 (NCTC12059_00436) - 418476..418832 (-) 357 WP_031488470.1 hypothetical protein -
  DQL11_RS02210 (NCTC12059_00437) - 418829..419248 (-) 420 WP_002983376.1 HIT family protein -
  DQL11_RS02215 (NCTC12059_00438) pptA 419320..420045 (+) 726 WP_002983379.1 ABC transporter ATP-binding protein Regulator
  DQL11_RS02220 (NCTC12059_00439) pptB 420048..421082 (+) 1035 WP_031577431.1 ABC transporter permease Regulator
  DQL11_RS02225 (NCTC12059_00440) ccrZ 421146..421937 (+) 792 WP_002983385.1 cell cycle regulator CcrZ -
  DQL11_RS02230 (NCTC12059_00441) trmB 421937..422572 (+) 636 WP_002983387.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  DQL11_RS02240 (NCTC12059_00443) rimP 422831..423367 (+) 537 WP_002983483.1 ribosome maturation factor RimP -
  DQL11_RS02245 (NCTC12059_00444) nusA 423542..424699 (+) 1158 WP_002988817.1 transcription termination factor NusA -
  DQL11_RS02250 (NCTC12059_00445) rnpM 424715..425011 (+) 297 WP_002983486.1 RNase P modulator RnpM -
  DQL11_RS02255 (NCTC12059_00446) - 425004..425306 (+) 303 WP_002983488.1 YlxQ-related RNA-binding protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 40256.54 Da        Isoelectric Point: 10.3713

>NTDB_id=1016443 DQL11_RS02220 WP_031577431.1 420048..421082(+) (pptB) [Streptococcus pyogenes strain NCTC12059]
MKALFLKRRQDFQKQQNKYLRYVLNDHFVLVLMFLLGFAMVQYGQLLNHFPTNHLPIQVCLGILIPLLLSMGSIATYLEE
ADQHFLLPKEEEVISYIKQAERLSFLLWGTLQTAVLLFLYPIFRRLGLSLFIFIILVLILLALKRVVLSRKTRYFLRGNR
LDWAKAVAFESNRKQSILKFYSLFTTVKGISIKVKERAYLNPLLKLVKQTPSNLWLSLYARAFLRSSDYLGLFLRLMLLS
SLSVFFIHNLYLSVSLALIFNYLVVFQLLSLYYHYDYHYMTSLYPENSRSKKKNMLSFLRGLSFLMLIVNMLCCSSAPKA
LILIVGMVFIACIYLPYKLKKIID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=1016443 DQL11_RS02220 WP_031577431.1 420048..421082(+) (pptB) [Streptococcus pyogenes strain NCTC12059]
ATGAAAGCATTATTTCTGAAACGCCGTCAAGACTTTCAAAAACAACAAAACAAATACCTTCGTTACGTCTTAAATGATCA
CTTTGTTTTGGTGTTGATGTTTTTATTAGGCTTTGCTATGGTGCAGTATGGTCAGCTACTAAACCATTTTCCAACGAATC
ATCTACCTATTCAGGTTTGTCTTGGGATATTGATCCCATTATTGCTCAGTATGGGATCTATAGCAACGTATCTAGAAGAG
GCAGATCAGCATTTCTTACTTCCAAAAGAAGAAGAAGTGATTTCTTATATCAAACAAGCTGAGCGACTCTCTTTTTTGCT
TTGGGGAACTTTGCAGACTGCTGTATTGCTCTTTTTATATCCTATTTTTAGACGTCTAGGTCTGTCTTTATTTATTTTTA
TTATCTTAGTTTTGATATTATTGGCACTAAAAAGAGTAGTGCTTAGTCGAAAGACAAGATATTTTTTGAGAGGAAATCGT
TTAGATTGGGCAAAAGCTGTCGCATTTGAAAGCAATCGCAAGCAAAGTATTTTAAAGTTTTATTCTCTTTTTACAACAGT
CAAAGGAATTTCTATAAAAGTGAAAGAAAGAGCTTATCTAAATCCTCTTTTAAAATTAGTTAAGCAAACTCCTTCAAACC
TTTGGCTGTCCCTTTATGCTAGAGCCTTTTTACGTAGTTCAGATTATTTGGGCTTATTTTTACGACTAATGCTATTAAGC
TCATTATCTGTATTTTTTATCCATAATCTTTATTTGTCAGTAAGTTTAGCACTCATTTTTAACTATTTAGTTGTATTCCA
ATTACTTTCACTTTATTATCACTACGATTACCATTATATGACTAGTCTTTATCCTGAAAATAGTCGGAGCAAGAAGAAAA
ATATGTTAAGTTTTTTACGAGGTTTAAGCTTTTTAATGTTAATCGTCAATATGCTGTGTTGCTCATCAGCGCCCAAAGCA
CTCATTTTGATTGTAGGTATGGTTTTCATAGCTTGTATATATCTACCTTATAAGTTAAAGAAGATCATTGACTAA

Domains

Predicted by InterProScan.

Bacterial ABC transporter protein EcsB (EcsB)

(2-151)

Bacterial ABC transporter protein EcsB (EcsB)

(158-330)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

43.023

100

0.43
  pptB Streptococcus thermophilus LMD-9

43.023

100

0.43