Detailed information NTG1016310

Bioinformatically predicted

Overview

• Name: degS
• Type: Regulator
• Locus tag: ABNX04_RS16960
• Genome accession: NZ_CP159868
• Coordinates: 3474222..3475385 (-)
• Length: 387 a.a.
• NCBI ID: WP_007407484.1
• Uniprot ID: A3KLC1
• Organism: Bacillus velezensis strain JLU-1
• Function: phosphorylation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3469222..3480385

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABNX04_RS16930 (ABNX04_16930)	-	3469486..3469905 (-)	420	WP_012118571.1	TIGR03826 family flagellar region protein	-
ABNX04_RS16935 (ABNX04_16935)	comFC	3469979..3470668 (-)	690	WP_197200179.1	double zinc ribbon domain-containing protein	Machinery gene
ABNX04_RS16940 (ABNX04_16940)	-	3470674..3470958 (-)	285	WP_007407481.1	competence protein ComFB	-
ABNX04_RS16945 (ABNX04_16945)	comFA	3471016..3472401 (-)	1386	WP_099320008.1	DEAD/DEAH box helicase	Machinery gene
ABNX04_RS16950 (ABNX04_16950)	-	3472510..3473358 (-)	849	WP_094031329.1	DegV family protein	-
ABNX04_RS16955 (ABNX04_16955)	degU	3473456..3474145 (-)	690	WP_003219701.1	two-component system response regulator DegU	Regulator
ABNX04_RS16960 (ABNX04_16960)	degS	3474222..3475385 (-)	1164	WP_007407484.1	two-component sensor histidine kinase DegS	Regulator
ABNX04_RS16965 (ABNX04_16965)	-	3475608..3476255 (+)	648	WP_007407485.1	YigZ family protein	-
ABNX04_RS16970 (ABNX04_16970)	-	3476260..3477495 (+)	1236	WP_025285355.1	LCP family protein	-
ABNX04_RS16975 (ABNX04_16975)	-	3477594..3478670 (-)	1077	WP_003151382.1	MraY family glycosyltransferase	-
ABNX04_RS16980 (ABNX04_16980)	-	3478803..3479999 (-)	1197	WP_094031330.1	glycosyltransferase	-

Sequence

Protein

• Length: 387 a.a.
• Molecular weight: 45014.78 Da
• Isoelectric Point: 6.8616

>NTDB_id=1016310 ABNX04_RS16960 WP_007407484.1 3474222..3475385(-) (degS) [Bacillus velezensis strain JLU-1]
MNKSKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVHTRHARNRLSEVSR
NFHKFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLRQVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEDGFQEIRNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGDTENQRLAPQFEVALFRLAQEAVTNALKHSESEEITVKVEV
TADFVVLIIKDNGKGFDIKDAKQKKNKSFGLLGMKERVDLLEGTITIDSKIGLGTFIMIKVPLSLGL

Nucleotide

• Length: 1164 bp

>NTDB_id=1016310 ABNX04_RS16960 WP_007407484.1 3474222..3475385(-) (degS) [Bacillus velezensis strain JLU-1]
ATGAATAAATCGAAGATGGACTCCAAAGTTTTGGATTCTATACTTATGAAAATGCTGAAAACCGTGGACGGGAGTAAGGA
CGAGGTTTTTCAAATCGGAGAGCAGTCGCGCCAGCAATATGAGCAGCTGGTTGAAGAACTTAAACAGATCAAACAGCAGG
TCTACGAAGTCATTGAGCTGGGCGACAAACTTGAAGTTCATACGCGGCACGCACGAAACCGCTTGTCTGAAGTAAGCAGA
AATTTCCATAAGTTCAGCGAAGAAGAAATTCGCAACGCCTATGAAAAGGCGCACAAACTTCAAGTGGAACTGACGATGAT
CCAACAGCGTGAAAAGCAGCTGCGGGAGCGCAGAGATGATTTAGAACGCCGGCTTTTGGGGCTTCAGGAAATCATTGAAC
GGTCAGAATCATTGGTCAGCCAAATAACCGTCGTTCTGAATTACCTGAATCAAGACCTTCGCCAAGTAGGGCTTCTTCTT
GCCGATGCGCAGGCTAAACAAGATTTCGGTTTAAGAATCATTGAAGCCCAAGAGGAAGAAAGAAAAAGAGTTTCCAGAGA
AATTCATGACGGTCCCGCGCAAATGCTGGCAAATGTCATGATGAGATCGGAATTAATTGAACGGATCTTCCGCGACCGCG
GCACGGAGGACGGATTTCAGGAAATCAGAAATCTGCGGCAGAATGTGCGGAATGCCCTTTACGAAGTCAGAAGGATTATA
TATGATTTAAGACCGATGGCATTGGACGATCTCGGGCTGATTCCGACACTGAGAAAATATCTTTATACAACTGAAGAATA
CAACGGAAAGGTGAAAATACATTTTCAGTGTATCGGAGACACGGAGAACCAAAGGCTTGCCCCGCAATTTGAAGTGGCGC
TTTTCCGTCTCGCTCAGGAAGCCGTCACAAATGCACTCAAGCATTCAGAATCAGAGGAAATTACAGTAAAAGTGGAAGTA
ACCGCTGATTTTGTCGTTCTCATCATTAAGGACAACGGAAAAGGCTTTGATATTAAGGATGCTAAACAAAAGAAAAACAA
GTCATTCGGCTTGCTGGGAATGAAAGAAAGAGTAGATCTGCTTGAAGGAACGATAACGATAGACTCTAAAATAGGTCTTG
GGACATTTATCATGATTAAGGTTCCGTTATCTCTCGGCCTATAA

Domains

Predicted by InterproScan.

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (291-384)

• Sensor protein DegS (DegS) (12-170)

• Histidine kinase (HisKA_3) (180-248)

3D structure

• AlphaFold DB: A3KLC1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
degS	Bacillus subtilis subsp. subtilis str. 168	95.584	99.483	0.951