Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   ABNX04_RS16935 Genome accession   NZ_CP159868
Coordinates   3469979..3470668 (-) Length   229 a.a.
NCBI ID   WP_197200179.1    Uniprot ID   -
Organism   Bacillus velezensis strain JLU-1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3464979..3475668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNX04_RS16900 (ABNX04_16900) fliW 3465069..3465500 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  ABNX04_RS16905 (ABNX04_16905) - 3465530..3466099 (-) 570 WP_007407476.1 DUF6470 family protein -
  ABNX04_RS16910 (ABNX04_16910) flgL 3466191..3467108 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  ABNX04_RS16915 (ABNX04_16915) flgK 3467120..3468637 (-) 1518 WP_025285351.1 flagellar hook-associated protein FlgK -
  ABNX04_RS16920 (ABNX04_16920) - 3468653..3469135 (-) 483 WP_003151394.1 flagellar protein FlgN -
  ABNX04_RS16925 (ABNX04_16925) flgM 3469150..3469416 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  ABNX04_RS16930 (ABNX04_16930) - 3469486..3469905 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  ABNX04_RS16935 (ABNX04_16935) comFC 3469979..3470668 (-) 690 WP_197200179.1 double zinc ribbon domain-containing protein Machinery gene
  ABNX04_RS16940 (ABNX04_16940) - 3470674..3470958 (-) 285 WP_007407481.1 competence protein ComFB -
  ABNX04_RS16945 (ABNX04_16945) comFA 3471016..3472401 (-) 1386 WP_099320008.1 DEAD/DEAH box helicase Machinery gene
  ABNX04_RS16950 (ABNX04_16950) - 3472510..3473358 (-) 849 WP_094031329.1 DegV family protein -
  ABNX04_RS16955 (ABNX04_16955) degU 3473456..3474145 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ABNX04_RS16960 (ABNX04_16960) degS 3474222..3475385 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25257.89 Da        Isoelectric Point: 8.0779

>NTDB_id=1016307 ABNX04_RS16935 WP_197200179.1 3469979..3470668(-) (comFC) [Bacillus velezensis strain JLU-1]
MNCLLCDSPISSSLTWRSLFSLAPEQEICSICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTVGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1016307 ABNX04_RS16935 WP_197200179.1 3469979..3470668(-) (comFC) [Bacillus velezensis strain JLU-1]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GATATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTATATAATGATGCGATGAAGGACTCATTGGCCCGTTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAACTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATTTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGTGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(167-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

59.912

99.127

0.594

Multiple sequence alignment