Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   ABNX04_RS14975 Genome accession   NZ_CP159868
Coordinates   3086123..3086767 (-) Length   214 a.a.
NCBI ID   WP_354664729.1    Uniprot ID   -
Organism   Bacillus velezensis strain JLU-1     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3081123..3091767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNX04_RS14940 (ABNX04_14940) - 3082308..3082739 (+) 432 WP_007613424.1 Na(+)/H(+) antiporter subunit B -
  ABNX04_RS14945 (ABNX04_14945) - 3082739..3083080 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  ABNX04_RS14950 (ABNX04_14950) - 3083073..3084554 (+) 1482 WP_038459658.1 Na+/H+ antiporter subunit D -
  ABNX04_RS14955 (ABNX04_14955) - 3084560..3085036 (+) 477 WP_038459660.1 Na+/H+ antiporter subunit E -
  ABNX04_RS14960 (ABNX04_14960) - 3085036..3085320 (+) 285 WP_003152057.1 Na(+)/H(+) antiporter subunit F1 -
  ABNX04_RS14965 (ABNX04_14965) mnhG 3085304..3085678 (+) 375 WP_007613429.1 monovalent cation/H(+) antiporter subunit G -
  ABNX04_RS14970 (ABNX04_14970) - 3085718..3086101 (-) 384 WP_007613430.1 hotdog fold thioesterase -
  ABNX04_RS14975 (ABNX04_14975) comA 3086123..3086767 (-) 645 WP_354664729.1 response regulator transcription factor Regulator
  ABNX04_RS14980 (ABNX04_14980) comP 3086848..3089139 (-) 2292 WP_038459663.1 histidine kinase Regulator
  ABNX04_RS14985 (ABNX04_14985) comX 3089151..3089315 (-) 165 WP_007613432.1 competence pheromone ComX -
  ABNX04_RS14990 (ABNX04_14990) - 3089315..3090193 (-) 879 WP_038460875.1 polyprenyl synthetase family protein -
  ABNX04_RS14995 (ABNX04_14995) degQ 3090378..3090518 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  ABNX04_RS15000 (ABNX04_15000) - 3090984..3091325 (+) 342 WP_038459666.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24299.74 Da        Isoelectric Point: 4.9953

>NTDB_id=1016302 ABNX04_RS14975 WP_354664729.1 3086123..3086767(-) (comA) [Bacillus velezensis strain JLU-1]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEVVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=1016302 ABNX04_RS14975 WP_354664729.1 3086123..3086767(-) (comA) [Bacillus velezensis strain JLU-1]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTTGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAATAAGCTGAATGTCGGCTCCCGAACTGAAGTGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(153-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

85.981

100

0.86

Multiple sequence alignment