Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrC   Type   Regulator
Locus tag   ABNX04_RS02000 Genome accession   NZ_CP159868
Coordinates   392841..392960 (+) Length   39 a.a.
NCBI ID   WP_033575081.1    Uniprot ID   -
Organism   Bacillus velezensis strain JLU-1     
Function   antagonize RapC (predicted from homology)   
Competence regulation

Genomic Context

Location: 387841..397960
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNX04_RS01985 (ABNX04_01985) - 389453..390136 (+) 684 WP_007609386.1 response regulator transcription factor -
  ABNX04_RS01990 (ABNX04_01990) - 390123..391550 (+) 1428 WP_162472289.1 HAMP domain-containing sensor histidine kinase -
  ABNX04_RS01995 (ABNX04_01995) rapC 391709..392857 (+) 1149 WP_038456948.1 Rap family tetratricopeptide repeat protein Regulator
  ABNX04_RS02000 (ABNX04_02000) phrC 392841..392960 (+) 120 WP_033575081.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  ABNX04_RS02005 (ABNX04_02005) - 393109..393204 (-) 96 WP_012116800.1 YjcZ family sporulation protein -
  ABNX04_RS02010 (ABNX04_02010) - 393299..394663 (-) 1365 WP_038456950.1 aspartate kinase -
  ABNX04_RS02015 (ABNX04_02015) ceuB 395077..396030 (+) 954 WP_032872883.1 ABC transporter permease Machinery gene
  ABNX04_RS02020 (ABNX04_02020) - 396020..396967 (+) 948 WP_014416905.1 iron chelate uptake ABC transporter family permease subunit -
  ABNX04_RS02025 (ABNX04_02025) - 396961..397719 (+) 759 WP_003156330.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4214.93 Da        Isoelectric Point: 8.0284

>NTDB_id=1016252 ABNX04_RS02000 WP_033575081.1 392841..392960(+) (phrC) [Bacillus velezensis strain JLU-1]
MKLKSKWFVICLAAAAIFTVTGAGQTDQADFHVAERGMT

Nucleotide


Download         Length: 120 bp        

>NTDB_id=1016252 ABNX04_RS02000 WP_033575081.1 392841..392960(+) (phrC) [Bacillus velezensis strain JLU-1]
ATGAAATTGAAATCTAAATGGTTTGTTATTTGTTTAGCAGCCGCCGCGATTTTTACAGTGACAGGAGCAGGCCAGACAGA
TCAGGCTGACTTCCATGTAGCTGAAAGAGGAATGACGTGA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrC Bacillus subtilis subsp. subtilis str. 168

72.5

100

0.744

Multiple sequence alignment