Detailed information NTG1016251

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: ABNX04_RS01995
• Genome accession: NZ_CP159868
• Coordinates: 391709..392857 (+)
• Length: 382 a.a.
• NCBI ID: WP_038456948.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain JLU-1
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 386709..397857

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABNX04_RS01975 (ABNX04_01975)	-	387112..387795 (-)	684	WP_038456944.1	ABC transporter ATP-binding protein	-
ABNX04_RS01980 (ABNX04_01980)	-	387810..389240 (-)	1431	WP_038456945.1	ABC transporter permease	-
ABNX04_RS01985 (ABNX04_01985)	-	389453..390136 (+)	684	WP_007609386.1	response regulator transcription factor	-
ABNX04_RS01990 (ABNX04_01990)	-	390123..391550 (+)	1428	WP_162472289.1	HAMP domain-containing sensor histidine kinase	-
ABNX04_RS01995 (ABNX04_01995)	rapC	391709..392857 (+)	1149	WP_038456948.1	Rap family tetratricopeptide repeat protein	Regulator
ABNX04_RS02000 (ABNX04_02000)	phrC	392841..392960 (+)	120	WP_033575081.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
ABNX04_RS02005 (ABNX04_02005)	-	393109..393204 (-)	96	WP_012116800.1	YjcZ family sporulation protein	-
ABNX04_RS02010 (ABNX04_02010)	-	393299..394663 (-)	1365	WP_038456950.1	aspartate kinase	-
ABNX04_RS02015 (ABNX04_02015)	ceuB	395077..396030 (+)	954	WP_032872883.1	ABC transporter permease	Machinery gene
ABNX04_RS02020 (ABNX04_02020)	-	396020..396967 (+)	948	WP_014416905.1	iron chelate uptake ABC transporter family permease subunit	-
ABNX04_RS02025 (ABNX04_02025)	-	396961..397719 (+)	759	WP_003156330.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 45505.73 Da
• Isoelectric Point: 4.9916

>NTDB_id=1016251 ABNX04_RS01995 WP_038456948.1 391709..392857(+) (rapC) [Bacillus velezensis strain JLU-1]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDHMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEET
ISTCFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide

• Length: 1149 bp

>NTDB_id=1016251 ABNX04_RS01995 WP_038456948.1 391709..392857(+) (rapC) [Bacillus velezensis strain JLU-1]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTATCGATACATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCATATGGAGCCTGATTCGAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAAGGGCTTCTCGATTATTACGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATCTCAGCGATTACATATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCATGTGGAACGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTAGAGCAGGACACATATAACGTCCGGATCATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGCGCTTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAATCTCGGACTGTGCTACTACAATCAGGACCGCATCGGC
GAAGCGATTCCGTACTTTGAACGGGCGGTTGATACATTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
TCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGAAAAAGCGTCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTACACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAACA
ATCAGCACGTGTTTCCGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAGATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_12) (223-294)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	82.461	100	0.825
rapF	Bacillus subtilis subsp. subtilis str. 168	57.105	99.476	0.568