Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   DQL83_RS02685 Genome accession   NZ_LS483311
Coordinates   516100..516696 (+) Length   198 a.a.
NCBI ID   WP_000559162.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NCTC6136     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 511100..521696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL83_RS02655 (NCTC6136_00484) treR 512025..512753 (+) 729 WP_001118675.1 trehalose operon repressor -
  DQL83_RS02665 - 513157..513258 (+) 102 WP_031775041.1 hypothetical protein -
  DQL83_RS02670 (NCTC6136_00488) - 513396..513920 (+) 525 WP_001167824.1 GNAT family N-acetyltransferase -
  DQL83_RS02675 (NCTC6136_00489) dnaX 513989..515686 (+) 1698 WP_001109047.1 DNA polymerase III subunit gamma/tau -
  DQL83_RS02680 (NCTC6136_00490) - 515776..516093 (+) 318 WP_001213992.1 YbaB/EbfC family nucleoid-associated protein -
  DQL83_RS02685 (NCTC6136_00491) recR 516100..516696 (+) 597 WP_000559162.1 recombination mediator RecR Machinery gene
  DQL83_RS02690 - 516901..517006 (+) 106 Protein_505 hypothetical protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22113.54 Da        Isoelectric Point: 4.7623

>NTDB_id=1016237 DQL83_RS02685 WP_000559162.1 516100..516696(+) (recR) [Staphylococcus aureus strain NCTC6136]
MHYPEPISKLIDSFMKLPGIGPKTAQRLAFHTLDMKEDDVVQFAKALVDVKRELTYCSVCGHITENEPCYICEDKQRDRS
VICVVEDDKDVIAMEKMREYKGLYHVLHGSISPMDGIGPEDINIPSLIERLKNDEVSELILAMNPNLEGESTAMYISRLV
KPIGIKVTRLAQGLSVGGDLEYADEVTLSKAIAGRTEM

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1016237 DQL83_RS02685 WP_000559162.1 516100..516696(+) (recR) [Staphylococcus aureus strain NCTC6136]
ATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACG
TCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAAT
TAACATATTGTAGCGTATGTGGTCACATTACTGAAAATGAGCCATGTTATATTTGTGAAGATAAACAAAGAGATCGTTCA
GTTATTTGTGTTGTGGAAGATGACAAAGATGTCATAGCTATGGAAAAAATGAGAGAATACAAAGGTTTATATCACGTTTT
ACATGGGTCTATTTCGCCTATGGATGGAATTGGACCAGAAGATATTAATATTCCTTCATTGATTGAACGCTTGAAAAACG
ATGAAGTTAGCGAATTAATCTTAGCTATGAACCCGAACTTAGAGGGGGAATCTACAGCCATGTATATTTCTAGATTAGTT
AAGCCTATAGGTATCAAAGTGACGAGATTAGCACAAGGGTTATCGGTAGGTGGCGATTTAGAGTATGCTGACGAAGTAAC
ATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-171)

RecR protein (RecR_ZnF)

(40-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

76.768

100

0.768
  recR Streptococcus pneumoniae R6

63.636

100

0.636
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.718

98.485

0.48