Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   APECO2_RS20425 Genome accession   NZ_CP006834
Coordinates   3889448..3890185 (+) Length   245 a.a.
NCBI ID   WP_000197684.1    Uniprot ID   -
Organism   Escherichia coli APEC O2-211     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3884448..3895185
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APECO2_RS20410 (APECO2_15640) clpC 3884902..3887475 (-) 2574 WP_001317994.1 ATP-dependent chaperone ClpB Regulator
  APECO2_RS20415 (APECO2_15645) yfiH 3887605..3888336 (-) 732 WP_000040126.1 purine nucleoside phosphorylase YfiH -
  APECO2_RS20420 (APECO2_15650) rluD 3888333..3889313 (-) 981 WP_000079108.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  APECO2_RS20425 (APECO2_15655) comL 3889448..3890185 (+) 738 WP_000197684.1 outer membrane protein assembly factor BamD Machinery gene
  APECO2_RS20430 (APECO2_15660) insG 3890289..3891636 (+) 1348 Protein_3754 IS4-like element IS4 family transposase -
  APECO2_RS20440 (APECO2_15665) raiA 3891897..3892238 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  APECO2_RS20445 (APECO2_27150) pheL 3892342..3892389 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  APECO2_RS20450 (APECO2_15670) pheA 3892488..3893648 (+) 1161 WP_000200129.1 bifunctional chorismate mutase/prephenate dehydratase -
  APECO2_RS20455 (APECO2_15675) tyrA 3893691..3894812 (-) 1122 WP_000225233.1 bifunctional chorismate mutase/prephenate dehydrogenase -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27811.36 Da        Isoelectric Point: 6.4874

>NTDB_id=101599 APECO2_RS20425 WP_000197684.1 3889448..3890185(+) (comL) [Escherichia coli APEC O2-211]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQLNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=101599 APECO2_RS20425 WP_000197684.1 3889448..3890185(+) (comL) [Escherichia coli APEC O2-211]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTACTATACAGA
ACGTGGTGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGTTGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

39.167

97.959

0.384

Multiple sequence alignment