Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   V5122_RS02810 Genome accession   NZ_CP159797
Coordinates   584539..585108 (+) Length   189 a.a.
NCBI ID   WP_119098270.1    Uniprot ID   -
Organism   Staphylococcus aureus strain BSN38-MRSA1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 579539..590108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5122_RS02785 (V5122_02785) cysE 580752..581399 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  V5122_RS02790 (V5122_02790) cysS 581383..582783 (+) 1401 WP_000631963.1 cysteine--tRNA ligase -
  V5122_RS02795 (V5122_02795) - 582776..583180 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  V5122_RS02800 (V5122_02800) rlmB 583188..583934 (+) 747 WP_000390328.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  V5122_RS02805 (V5122_02805) - 583934..584458 (+) 525 WP_000664738.1 NYN domain-containing protein -
  V5122_RS02810 (V5122_02810) sigH 584539..585108 (+) 570 WP_119098270.1 RNA polymerase sigma factor Regulator
  V5122_RS02815 (V5122_02815) rpmG 585223..585366 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  V5122_RS02820 (V5122_02820) secE 585422..585604 (+) 183 WP_001074474.1 preprotein translocase subunit SecE -
  V5122_RS02825 (V5122_02825) nusG 585617..586165 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  V5122_RS02830 (V5122_02830) rplK 586346..586768 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  V5122_RS02835 (V5122_02835) rplA 586976..587668 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  V5122_RS02840 (V5122_02840) rplJ 587940..588440 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  V5122_RS02845 (V5122_02845) rplL 588483..588851 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  V5122_RS02850 (V5122_02850) - 589026..589634 (+) 609 WP_000020304.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23040.96 Da        Isoelectric Point: 9.4170

>NTDB_id=1015872 V5122_RS02810 WP_119098270.1 584539..585108(+) (sigH) [Staphylococcus aureus strain BSN38-MRSA1]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQIFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=1015872 V5122_RS02810 WP_119098270.1 584539..585108(+) (sigH) [Staphylococcus aureus strain BSN38-MRSA1]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAATATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTTTGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

98.942

100

0.989
  sigH Staphylococcus aureus MW2

97.884

100

0.979

Multiple sequence alignment