Detailed information NTG1015754

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ABVQ18_RS03395
• Genome accession: NZ_CP159767
• Coordinates: 786366..787217 (-)
• Length: 283 a.a.
• NCBI ID: WP_370388521.1
• Uniprot ID: -
• Organism: Snodgrassella alvi strain Acer05
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 781366..792217

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABVQ18_RS03360 (ABVQ18_14745)	murA	781443..782699 (-)	1257	WP_367431330.1	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	-
ABVQ18_RS03365 (ABVQ18_14750)	-	782770..783018 (-)	249	WP_100140843.1	BolA family protein	-
ABVQ18_RS03370 (ABVQ18_14755)	-	783075..783830 (-)	756	WP_100140882.1	ABC transporter permease	-
ABVQ18_RS03375 (ABVQ18_16625)	-	783833..784750 (-)	918	WP_370388519.1	ABC transporter ATP-binding protein	-
ABVQ18_RS03380 (ABVQ18_14775)	yacG	784800..784997 (-)	198	WP_267392005.1	DNA gyrase inhibitor YacG	-
ABVQ18_RS03385 (ABVQ18_16630)	zapD	784997..785749 (-)	753	WP_100140881.1	cell division protein ZapD	-
ABVQ18_RS03390 (ABVQ18_14800)	coaE	785755..786369 (-)	615	WP_370388520.1	dephospho-CoA kinase	-
ABVQ18_RS03395 (ABVQ18_14805)	pilD	786366..787217 (-)	852	WP_370388521.1	A24 family peptidase	Machinery gene
ABVQ18_RS03400 (ABVQ18_14810)	pilG	787224..788456 (-)	1233	WP_100156468.1	type II secretion system F family protein	Machinery gene
ABVQ18_RS03405 (ABVQ18_16635)	pilF	788503..790182 (-)	1680	WP_267408994.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ABVQ18_RS03410 (ABVQ18_14835)	recJ	790381..792078 (-)	1698	WP_370388522.1	single-stranded-DNA-specific exonuclease RecJ	-

Sequence

Protein

• Length: 283 a.a.
• Molecular weight: 31141.16 Da
• Isoelectric Point: 7.8949

>NTDB_id=1015754 ABVQ18_RS03395 WP_370388521.1 786366..787217(-) (pilD) [Snodgrassella alvi strain Acer05]
MLSDTLFFSIIALITGLAVGSFLNVVIYRLPIMMERSWQAEARMALQLPAENFACFNLCVPPSACPHCQHKIRWWQNIPL
ISYLLLHGRCAACAKPISPRYFCVELLTGLAFAAVIWRYDVTPVAAGGLVLTAALITLTFIDADTQLLPDQITLPLLWLG
LLFNWYSEFVSLSAAIWGAVAGYMSLWSLFWLFKLITGKDGMGYGDFKLLAALGAWMGAAALPLIVFIAAIVGIIASLIL
KVARSQPMAFGPALAISGWIVWMANSQISQLIHWWLQLSGFNA

Nucleotide

• Length: 852 bp

>NTDB_id=1015754 ABVQ18_RS03395 WP_370388521.1 786366..787217(-) (pilD) [Snodgrassella alvi strain Acer05]
ATGTTATCAGATACACTGTTTTTCTCCATCATCGCATTAATAACAGGTTTAGCTGTAGGCAGCTTTCTAAACGTAGTCAT
CTATCGTCTGCCGATCATGATGGAACGCAGCTGGCAGGCTGAAGCACGAATGGCATTGCAATTACCGGCAGAAAATTTTG
CCTGTTTCAATCTTTGCGTACCCCCGTCAGCCTGCCCCCATTGCCAGCATAAAATTCGCTGGTGGCAAAATATACCATTG
ATAAGTTATCTTCTCTTACATGGTCGTTGTGCTGCTTGTGCAAAACCGATTAGCCCTCGCTATTTCTGTGTCGAACTGCT
TACCGGACTAGCGTTTGCCGCAGTAATATGGCGCTATGATGTAACACCAGTTGCCGCCGGTGGTCTGGTTTTGACAGCTG
CGTTGATAACATTAACATTTATCGATGCTGATACTCAGCTCTTGCCAGATCAGATTACTTTGCCATTACTGTGGCTGGGA
TTACTGTTTAATTGGTATAGTGAATTTGTATCCTTATCTGCAGCTATATGGGGAGCAGTAGCAGGCTATATGAGCTTGTG
GTCACTGTTTTGGCTATTCAAGCTCATAACCGGAAAAGATGGCATGGGTTATGGTGATTTTAAACTGCTGGCTGCTCTAG
GCGCATGGATGGGTGCTGCTGCATTGCCATTAATTGTATTTATAGCTGCTATTGTTGGCATCATTGCCTCTTTGATACTC
AAAGTTGCCCGCAGTCAGCCAATGGCTTTTGGCCCGGCTCTAGCCATCTCCGGCTGGATTGTTTGGATGGCCAACAGCCA
AATTAGCCAGCTCATTCACTGGTGGTTGCAACTTTCTGGATTCAATGCATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (129-236)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (14-119)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Neisseria gonorrhoeae MS11	55.019	95.053	0.523
pilD	Acinetobacter baumannii D1279779	51.292	95.76	0.491
pilD	Acinetobacter nosocomialis M2	51.292	95.76	0.491
pilD	Vibrio cholerae strain A1552	49.097	97.88	0.481
pilD	Vibrio campbellii strain DS40M4	46.863	95.76	0.449