Detailed information NTG1015740

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ABXR87_RS16980
• Genome accession: NZ_CP159763
• Coordinates: 3583546..3584406 (+)
• Length: 286 a.a.
• NCBI ID: WP_001152275.1
• Uniprot ID: -
• Organism: Acinetobacter baumannii strain AB11-AUFP
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3578546..3589406

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABXR87_RS16960 (ABXR87_16960)	secG	3579151..3579480 (-)	330	WP_000555570.1	preprotein translocase subunit SecG	-
ABXR87_RS16965 (ABXR87_16965)	tpiA	3579493..3580287 (-)	795	WP_000016932.1	triose-phosphate isomerase	-
ABXR87_RS16970 (ABXR87_16970)	pilB	3580578..3582290 (+)	1713	WP_001274985.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ABXR87_RS16975 (ABXR87_16975)	pilC	3582320..3583546 (+)	1227	WP_000279216.1	type II secretion system F family protein	Machinery gene
ABXR87_RS16980 (ABXR87_16980)	pilD	3583546..3584406 (+)	861	WP_001152275.1	A24 family peptidase	Machinery gene
ABXR87_RS16985 (ABXR87_16985)	coaE	3584408..3585004 (+)	597	WP_000874127.1	dephospho-CoA kinase	-
ABXR87_RS16990 (ABXR87_16990)	-	3585001..3585915 (-)	915	WP_000075023.1	DMT family transporter	-
ABXR87_RS16995 (ABXR87_16995)	rlmB	3585951..3586700 (-)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
ABXR87_RS17000 (ABXR87_17000)	-	3586802..3587128 (-)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
ABXR87_RS17005 (ABXR87_17005)	-	3587205..3588515 (-)	1311	WP_000753280.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32108.51 Da
• Isoelectric Point: 7.1041

>NTDB_id=1015740 ABXR87_RS16980 WP_001152275.1 3583546..3584406(+) (pilD) [Acinetobacter baumannii strain AB11-AUFP]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLMLRGKCGHCQHPISIRYPAVELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLTLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITSKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=1015740 ABXR87_RS16980 WP_001152275.1 3583546..3584406(+) (pilD) [Acinetobacter baumannii strain AB11-AUFP]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCGATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTATGTTAAGAGGAAAGTGTGGCCATTGCCAGCACCCGATTAG
TATTCGCTATCCAGCCGTCGAACTACTCACCATGCTATGTTCATTAGTAGTCGTCATGGTGTTTGGTCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTAACTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTTCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTAGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	97.902	100	0.979
pilD	Acinetobacter nosocomialis M2	97.552	100	0.976
pilD	Vibrio cholerae strain A1552	52.941	95.105	0.503
pilD	Vibrio campbellii strain DS40M4	51.661	94.755	0.49
pilD	Neisseria gonorrhoeae MS11	46.591	92.308	0.43