Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | ABXR87_RS09725 | Genome accession | NZ_CP159763 |
| Coordinates | 2070145..2070525 (-) | Length | 126 a.a. |
| NCBI ID | WP_000836911.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain AB11-AUFP | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2065145..2075525
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABXR87_RS09695 (ABXR87_09695) | tadA | 2065264..2065767 (-) | 504 | WP_001997771.1 | tRNA adenosine(34) deaminase TadA | - |
| ABXR87_RS09700 (ABXR87_09700) | - | 2065774..2066898 (-) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| ABXR87_RS09705 (ABXR87_09705) | ung | 2066895..2067608 (-) | 714 | WP_001177530.1 | uracil-DNA glycosylase | - |
| ABXR87_RS09710 (ABXR87_09710) | - | 2067659..2068255 (-) | 597 | WP_000908453.1 | 6-carboxytetrahydropterin synthase | - |
| ABXR87_RS09715 (ABXR87_09715) | gspK | 2068485..2069444 (-) | 960 | WP_000301460.1 | type II secretion system minor pseudopilin GspK | - |
| ABXR87_RS09720 (ABXR87_09720) | xcpW | 2069444..2070145 (-) | 702 | WP_000594572.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| ABXR87_RS09725 (ABXR87_09725) | xcpV | 2070145..2070525 (-) | 381 | WP_000836911.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| ABXR87_RS09730 (ABXR87_09730) | - | 2070515..2071069 (-) | 555 | WP_000841372.1 | type II secretion system protein | - |
| ABXR87_RS09735 (ABXR87_09735) | - | 2071079..2071687 (-) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| ABXR87_RS09740 (ABXR87_09740) | - | 2071725..2072498 (-) | 774 | WP_000497301.1 | TatD family hydrolase | - |
| ABXR87_RS09745 (ABXR87_09745) | - | 2072516..2072857 (-) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| ABXR87_RS09750 (ABXR87_09750) | - | 2072869..2073849 (-) | 981 | WP_001075416.1 | DNA polymerase III subunit delta' | - |
| ABXR87_RS09755 (ABXR87_09755) | kdsB | 2073861..2074622 (-) | 762 | WP_000680696.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13975.20 Da Isoelectric Point: 9.8004
>NTDB_id=1015724 ABXR87_RS09725 WP_000836911.1 2070145..2070525(-) (xcpV) [Acinetobacter baumannii strain AB11-AUFP]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=1015724 ABXR87_RS09725 WP_000836911.1 2070145..2070525(-) (xcpV) [Acinetobacter baumannii strain AB11-AUFP]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACACATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACACATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
100 |
100 |
1 |