Detailed information NTG1015723

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: ABXR87_RS09720
• Genome accession: NZ_CP159763
• Coordinates: 2069444..2070145 (-)
• Length: 233 a.a.
• NCBI ID: WP_000594572.1
• Uniprot ID: A0A009IN88
• Organism: Acinetobacter baumannii strain AB11-AUFP
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2064444..2075145

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABXR87_RS09690 (ABXR87_09690)	-	2064751..2065194 (-)	444	WP_002068274.1	SRPBCC family protein	-
ABXR87_RS09695 (ABXR87_09695)	tadA	2065264..2065767 (-)	504	WP_001997771.1	tRNA adenosine(34) deaminase TadA	-
ABXR87_RS09700 (ABXR87_09700)	-	2065774..2066898 (-)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
ABXR87_RS09705 (ABXR87_09705)	ung	2066895..2067608 (-)	714	WP_001177530.1	uracil-DNA glycosylase	-
ABXR87_RS09710 (ABXR87_09710)	-	2067659..2068255 (-)	597	WP_000908453.1	6-carboxytetrahydropterin synthase	-
ABXR87_RS09715 (ABXR87_09715)	gspK	2068485..2069444 (-)	960	WP_000301460.1	type II secretion system minor pseudopilin GspK	-
ABXR87_RS09720 (ABXR87_09720)	xcpW	2069444..2070145 (-)	702	WP_000594572.1	type II secretion system minor pseudopilin GspJ	Machinery gene
ABXR87_RS09725 (ABXR87_09725)	xcpV	2070145..2070525 (-)	381	WP_000836911.1	type II secretion system minor pseudopilin GspI	Machinery gene
ABXR87_RS09730 (ABXR87_09730)	-	2070515..2071069 (-)	555	WP_000841372.1	type II secretion system protein	-
ABXR87_RS09735 (ABXR87_09735)	-	2071079..2071687 (-)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
ABXR87_RS09740 (ABXR87_09740)	-	2071725..2072498 (-)	774	WP_000497301.1	TatD family hydrolase	-
ABXR87_RS09745 (ABXR87_09745)	-	2072516..2072857 (-)	342	WP_001183024.1	PilZ domain-containing protein	-
ABXR87_RS09750 (ABXR87_09750)	-	2072869..2073849 (-)	981	WP_001075416.1	DNA polymerase III subunit delta'	-
ABXR87_RS09755 (ABXR87_09755)	kdsB	2073861..2074622 (-)	762	WP_000680696.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26613.59 Da
• Isoelectric Point: 9.5501

>NTDB_id=1015723 ABXR87_RS09720 WP_000594572.1 2069444..2070145(-) (xcpW) [Acinetobacter baumannii strain AB11-AUFP]
MIKNKYIHIRSFAARLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=1015723 ABXR87_RS09720 WP_000594572.1 2069444..2070145(-) (xcpW) [Acinetobacter baumannii strain AB11-AUFP]
ATGATAAAAAATAAATATATTCACATCCGAAGCTTTGCTGCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGGCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGTAAAGCAGGCGTAACGGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGATCAAAAAAAACTATATCGTCTTAAATATACAAATTTAAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAATGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCACAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

3D structure

• AlphaFold DB: A0A009IN88

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	99.142	100	0.991