Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   ABXR87_RS01570 Genome accession   NZ_CP159763
Coordinates   337086..337904 (+) Length   272 a.a.
NCBI ID   WP_002068685.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain AB11-AUFP     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 332086..342904
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXR87_RS01535 (ABXR87_01535) - 332668..332798 (-) 131 Protein_293 hypothetical protein -
  ABXR87_RS01540 (ABXR87_01540) rpoZ 332837..333115 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  ABXR87_RS01545 (ABXR87_01545) gmk 333188..333817 (-) 630 WP_000015937.1 guanylate kinase -
  ABXR87_RS01550 (ABXR87_01550) ispH 333940..334890 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ABXR87_RS01555 (ABXR87_01555) fimU 335060..335533 (+) 474 WP_001214065.1 GspH/FimT family pseudopilin Machinery gene
  ABXR87_RS01560 (ABXR87_01560) pilV 335527..336087 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  ABXR87_RS01565 (ABXR87_01565) pilW 336088..337089 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  ABXR87_RS01570 (ABXR87_01570) pilX 337086..337904 (+) 819 WP_002068685.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ABXR87_RS01575 (ABXR87_01575) pilY1 337916..341770 (+) 3855 WP_002068954.1 PilC/PilY family type IV pilus protein Machinery gene
  ABXR87_RS01580 (ABXR87_01580) pilY2 341783..342265 (+) 483 WP_002068702.1 type IV pilin protein Machinery gene
  ABXR87_RS01585 (ABXR87_01585) pilE 342262..342687 (+) 426 WP_002068758.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28857.71 Da        Isoelectric Point: 6.2291

>NTDB_id=1015711 ABXR87_RS01570 WP_002068685.1 337086..337904(+) (pilX) [Acinetobacter baumannii strain AB11-AUFP]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCNLTSDYGSNRQAVVTQVAVSI
PTDAMPDIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=1015711 ABXR87_RS01570 WP_002068685.1 337086..337904(+) (pilX) [Acinetobacter baumannii strain AB11-AUFP]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGTGCAGCACTTAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACCTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGAGCAAGTTTGCTTCGGGCTGGCAGCGCCAATAATGCTGTGGTTGAAGACGGTG
GAGTAGCAGGTTTCTGCAATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGCCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGTATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCATCAACCTCTTTAGAAACTT
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

98.529

100

0.985

Multiple sequence alignment