Detailed information
Bioinformatically predicted
Overview
| Name | fimU | Type | Machinery gene |
| Locus tag | ABXR87_RS01555 | Genome accession | NZ_CP159763 |
| Coordinates | 335060..335533 (+) | Length | 157 a.a. |
| NCBI ID | WP_001214065.1 | Uniprot ID | N9K1Q3 |
| Organism | Acinetobacter baumannii strain AB11-AUFP | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 330060..340533
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABXR87_RS01530 (ABXR87_01530) | - | 330523..332628 (-) | 2106 | WP_001117590.1 | HD domain-containing protein | - |
| ABXR87_RS01535 (ABXR87_01535) | - | 332668..332798 (-) | 131 | Protein_293 | hypothetical protein | - |
| ABXR87_RS01540 (ABXR87_01540) | rpoZ | 332837..333115 (-) | 279 | WP_000135049.1 | DNA-directed RNA polymerase subunit omega | - |
| ABXR87_RS01545 (ABXR87_01545) | gmk | 333188..333817 (-) | 630 | WP_000015937.1 | guanylate kinase | - |
| ABXR87_RS01550 (ABXR87_01550) | ispH | 333940..334890 (+) | 951 | WP_000407064.1 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | - |
| ABXR87_RS01555 (ABXR87_01555) | fimU | 335060..335533 (+) | 474 | WP_001214065.1 | GspH/FimT family pseudopilin | Machinery gene |
| ABXR87_RS01560 (ABXR87_01560) | pilV | 335527..336087 (+) | 561 | WP_002194578.1 | type IV pilus modification protein PilV | Machinery gene |
| ABXR87_RS01565 (ABXR87_01565) | pilW | 336088..337089 (+) | 1002 | WP_000079197.1 | PilW family protein | Machinery gene |
| ABXR87_RS01570 (ABXR87_01570) | pilX | 337086..337904 (+) | 819 | WP_002068685.1 | PilX N-terminal domain-containing pilus assembly protein | Machinery gene |
Sequence
Protein
Download Length: 157 a.a. Molecular weight: 16837.43 Da Isoelectric Point: 8.5355
>NTDB_id=1015708 ABXR87_RS01555 WP_001214065.1 335060..335533(+) (fimU) [Acinetobacter baumannii strain AB11-AUFP]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC
Nucleotide
Download Length: 474 bp
>NTDB_id=1015708 ABXR87_RS01555 WP_001214065.1 335060..335533(+) (fimU) [Acinetobacter baumannii strain AB11-AUFP]
ATGAGGGGAATTATTCCACAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCATT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGCCGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAATGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA
ATGAGGGGAATTATTCCACAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCATT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGCCGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAATGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| fimU | Acinetobacter baumannii D1279779 |
100 |
100 |
1 |