Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   ABXR87_RS01440 Genome accession   NZ_CP159763
Coordinates   309000..309740 (+) Length   246 a.a.
NCBI ID   WP_002068850.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain AB11-AUFP     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 304000..314740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXR87_RS01425 (ABXR87_01425) ponA 304587..307142 (-) 2556 WP_025468065.1 penicillin-binding protein PBP1a -
  ABXR87_RS01430 (ABXR87_01430) pilM 307304..308362 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  ABXR87_RS01435 (ABXR87_01435) pilN 308362..309003 (+) 642 WP_002068918.1 PilN domain-containing protein Machinery gene
  ABXR87_RS01440 (ABXR87_01440) pilO 309000..309740 (+) 741 WP_002068850.1 type 4a pilus biogenesis protein PilO Machinery gene
  ABXR87_RS01445 (ABXR87_01445) pilP 309751..310278 (+) 528 WP_025468064.1 pilus assembly protein PilP Machinery gene
  ABXR87_RS01450 (ABXR87_01450) pilQ 310341..312506 (+) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  ABXR87_RS01455 (ABXR87_01455) aroK 312518..313087 (+) 570 WP_000643712.1 shikimate kinase AroK -
  ABXR87_RS01460 (ABXR87_01460) aroB 313116..314198 (+) 1083 WP_001193998.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27864.58 Da        Isoelectric Point: 4.7234

>NTDB_id=1015704 ABXR87_RS01440 WP_002068850.1 309000..309740(+) (pilO) [Acinetobacter baumannii strain AB11-AUFP]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQTIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGTTDTSEQTGSPPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=1015704 ABXR87_RS01440 WP_002068850.1 309000..309740(+) (pilO) [Acinetobacter baumannii strain AB11-AUFP]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAACTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTGCAACTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTAGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGACAACAGATACATCGGAGCAAACGGGCAGCCCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

98.374

100

0.984
  comO Acinetobacter baylyi ADP1

69.008

98.374

0.679

Multiple sequence alignment