Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   ABV523_RS09945 Genome accession   NZ_CP159758
Coordinates   2223536..2224342 (+) Length   268 a.a.
NCBI ID   WP_100152195.1    Uniprot ID   -
Organism   Snodgrassella alvi strain Acer02     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2218536..2229342
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABV523_RS09930 (ABV523_11805) - 2221372..2221521 (+) 150 WP_267391427.1 hypothetical protein -
  ABV523_RS09935 (ABV523_11800) pgeF 2221606..2222382 (-) 777 WP_369608990.1 peptidoglycan editing factor PgeF -
  ABV523_RS09940 (ABV523_11795) rluD 2222413..2223537 (-) 1125 WP_369608856.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ABV523_RS09945 (ABV523_11790) comL 2223536..2224342 (+) 807 WP_100152195.1 outer membrane protein assembly factor BamD Machinery gene
  ABV523_RS09950 (ABV523_11785) speD 2224733..2225098 (-) 366 WP_369608855.1 adenosylmethionine decarboxylase -
  ABV523_RS09955 (ABV523_18810) - 2225098..2226960 (-) 1863 WP_369608854.1 DUF4178 domain-containing protein -
  ABV523_RS09960 (ABV523_11760) - 2226969..2228000 (-) 1032 WP_267408299.1 SPFH domain-containing protein -
  ABV523_RS09965 (ABV523_11755) - 2228029..2228427 (-) 399 WP_100139677.1 DUF350 domain-containing protein -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 31068.89 Da        Isoelectric Point: 6.0347

>NTDB_id=1015677 ABV523_RS09945 WP_100152195.1 2223536..2224342(+) (comL) [Snodgrassella alvi strain Acer02]
MKNLFLAVALGLLLSACASTSTVDKDSQITQDWSVQRLYNEAHDELMHRNYTHAEKLYEILQSRFPYGSYAEQAQLDTAY
AYYKDDENDKALAAIEQFQRLYPQHPNMDYALYLKALIQLNEDKSFVNKLAKQDWSDRDPKANREAYTTFAQLVEYFPQS
KYAADARDKMQKLLDALGGNELSVARYYMKRGAWLAAVGRAQTVISQYQNTPNVEEALAIMVSAYEKLGEQKLSDDTKRV
LAQNFPNSPYLQSPWQDHNAIPWWRYWK

Nucleotide


Download         Length: 807 bp        

>NTDB_id=1015677 ABV523_RS09945 WP_100152195.1 2223536..2224342(+) (comL) [Snodgrassella alvi strain Acer02]
ATGAAAAATTTGTTTTTGGCGGTGGCCTTAGGCCTTTTACTGAGTGCCTGTGCCAGCACAAGTACGGTCGATAAGGATTC
CCAGATTACTCAGGACTGGTCTGTTCAGCGTCTGTATAATGAAGCACACGATGAGCTGATGCATCGTAATTATACTCATG
CAGAGAAATTATACGAAATTCTGCAGTCTCGATTCCCGTATGGTTCGTATGCGGAGCAGGCTCAGCTGGACACAGCATAT
GCTTATTATAAAGATGATGAGAATGATAAAGCATTGGCGGCAATTGAACAGTTTCAGCGTTTGTATCCGCAACACCCCAA
TATGGATTACGCTTTGTATTTGAAAGCACTGATTCAGCTGAATGAGGATAAATCCTTTGTTAATAAGCTGGCCAAACAAG
ATTGGTCTGACCGCGACCCGAAAGCTAATCGGGAAGCTTATACCACTTTTGCACAACTAGTAGAATATTTCCCTCAAAGT
AAATATGCTGCCGATGCTCGCGATAAGATGCAGAAACTACTGGATGCGCTTGGCGGGAATGAGCTTTCAGTAGCACGTTA
TTATATGAAACGCGGTGCATGGCTGGCGGCTGTTGGCCGTGCACAGACGGTTATTTCTCAATACCAGAATACGCCTAATG
TGGAGGAAGCGCTGGCTATTATGGTTTCTGCGTATGAAAAACTGGGTGAGCAGAAGCTCAGTGATGATACCAAGCGTGTT
CTGGCACAGAATTTTCCAAATAGCCCGTATCTGCAATCTCCGTGGCAGGATCACAATGCCATTCCATGGTGGCGTTACTG
GAAGTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

68.165

99.627

0.679
  comL Neisseria gonorrhoeae MS11

67.79

99.627

0.675

Multiple sequence alignment