Detailed information NTG1015665

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: ABV523_RS04135
• Genome accession: NZ_CP159758
• Coordinates: 938862..940334 (+)
• Length: 490 a.a.
• NCBI ID: WP_369608497.1
• Uniprot ID: -
• Organism: Snodgrassella alvi strain Acer02
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 933862..945334

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABV523_RS04125 (ABV523_04560)	parC	934970..937288 (+)	2319	WP_369608499.1	DNA topoisomerase IV subunit A	-
ABV523_RS04130 (ABV523_04550)	-	937295..938869 (+)	1575	WP_369608498.1	ATP-binding protein	-
ABV523_RS04135 (ABV523_04540)	pilR	938862..940334 (+)	1473	WP_369608497.1	sigma-54-dependent transcriptional regulator	Regulator
ABV523_RS04140 (ABV523_04535)	-	940334..941095 (+)	762	WP_369608496.1	class I SAM-dependent methyltransferase	-
ABV523_RS04145 (ABV523_17100)	-	941166..942149 (+)	984	WP_369608495.1	hypothetical protein	-
ABV523_RS04150 (ABV523_04520)	amgK	942202..943206 (-)	1005	WP_369608494.1	N-acetylmuramate/N-acetylglucosamine kinase AmgK	-

Sequence

Protein

• Length: 490 a.a.
• Molecular weight: 54598.25 Da
• Isoelectric Point: 6.2030

>NTDB_id=1015665 ABV523_RS04135 WP_369608497.1 938862..940334(+) (pilR) [Snodgrassella alvi strain Acer02]
MNSQVELKKPVLVIDDEADIRDLMELTLIKMGLSVQTAAGVAEAKKALRNHAFSLVLTDMRMPDGSGLEIVDYITEHNLD
IPIAVITAYGNAVQAVQALKNGAFDYLQKPITLAQLRTLVKSVLTINHSSDTDSITKAVINTKQSEVKSQNVSEPGRGSQ
SAAQERLLGHSPLIAEVRQLISKLAKSNVPVYIAGESGSGKEQAARSIHEQSARKDKAFVAVNCGAIPEALMESEFFGYK
KGSFTGADNDRAGFFQHADGGTLFLDEVADLPLSMQVKLLRAIQERAVRRIGEMEEKQVDVRIICATHKDLNALVETGQF
RQDLFYRLNVVSITMPPLRELRDDLPELIQVLLRRILRDETMTLSPAAEQALLQYSYPGNFRELENILERAIALSKNHII
EVDDLQIQSLSFDNQRNLSVDSVRNSAGENPARTDFQFGHTQIQDYLDDVERHILQQALAQTRYNRTQAAKLLGISFRSM
RYRMERLGIA

Nucleotide

• Length: 1473 bp

>NTDB_id=1015665 ABV523_RS04135 WP_369608497.1 938862..940334(+) (pilR) [Snodgrassella alvi strain Acer02]
ATGAATAGTCAGGTAGAATTAAAAAAGCCAGTGCTGGTAATAGATGATGAAGCTGATATTCGTGATTTAATGGAATTAAC
CCTGATAAAAATGGGTTTATCTGTCCAGACCGCTGCCGGAGTGGCTGAAGCCAAAAAAGCATTACGTAATCATGCTTTCT
CTCTGGTACTTACTGATATGCGCATGCCAGACGGATCTGGTCTGGAAATTGTAGATTATATAACCGAGCATAATCTGGAT
ATTCCCATTGCTGTGATTACTGCTTACGGTAATGCAGTGCAAGCAGTGCAGGCATTAAAAAATGGTGCTTTTGATTATCT
GCAAAAACCCATTACTCTGGCACAACTACGCACATTAGTTAAATCTGTGCTGACAATCAACCATAGCTCTGATACCGACT
CCATTACTAAAGCAGTCATAAACACTAAACAATCTGAAGTGAAATCCCAGAATGTTTCTGAGCCAGGTAGAGGGAGCCAA
AGTGCTGCTCAAGAGCGATTGCTTGGTCACTCCCCTTTAATTGCTGAAGTGCGACAATTAATAAGCAAACTGGCTAAATC
CAATGTACCAGTCTATATTGCTGGGGAATCCGGTAGTGGAAAAGAGCAAGCTGCCCGCAGTATTCATGAACAATCAGCAC
GTAAAGATAAAGCATTTGTTGCAGTCAATTGCGGAGCGATTCCTGAAGCATTGATGGAAAGTGAGTTTTTTGGTTATAAA
AAAGGGAGTTTTACCGGCGCAGACAATGACAGAGCAGGATTTTTTCAGCATGCAGATGGTGGTACATTATTTTTGGATGA
AGTAGCTGATTTGCCATTGTCCATGCAGGTAAAGCTTTTGCGTGCCATTCAGGAACGAGCTGTTCGCCGGATTGGTGAAA
TGGAAGAAAAGCAGGTTGATGTCCGTATTATCTGTGCTACTCATAAAGACCTGAATGCTTTGGTAGAAACAGGACAATTT
CGGCAGGATTTGTTTTACCGTCTAAATGTGGTGTCCATAACCATGCCCCCCTTACGTGAATTACGTGATGATTTACCAGA
ACTGATTCAGGTTTTGTTGCGACGTATTCTACGTGATGAAACCATGACCCTGAGCCCAGCAGCTGAGCAAGCTTTATTGC
AATATAGCTATCCCGGCAATTTCCGCGAGCTGGAAAATATATTAGAACGAGCAATTGCTTTATCAAAAAATCATATTATC
GAAGTTGATGATTTACAGATTCAAAGTCTCTCATTTGATAATCAGCGTAATTTATCAGTAGATAGTGTCCGTAATTCTGC
CGGGGAAAATCCCGCAAGGACAGATTTTCAGTTTGGTCACACCCAGATTCAGGACTATCTCGACGATGTAGAACGTCATA
TTCTGCAGCAGGCGCTGGCACAAACCCGTTATAACCGTACACAAGCGGCAAAACTATTGGGAATCAGCTTTAGATCAATG
CGTTATCGGATGGAACGATTGGGTATTGCCTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (447-486)

• Sigma-54 interaction domain (Sigma54_activat) (168-333)

• Response regulator receiver domain (Response_reg) (11-120)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	49.383	99.184	0.49
pilR	Acinetobacter baumannii strain A118	41.736	98.776	0.412