Detailed information NTG1015435

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: DQM96_RS23380
• Genome accession: NZ_LS483296
• Coordinates: 4473278..4474303 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain NCTC9966
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4468278..4479303

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DQM96_RS23360 (NCTC9966_04460)	metJ	4469339..4469656 (+)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-
DQM96_RS23365 (NCTC9966_04461)	yiiX	4469840..4470448 (+)	609	WP_000797353.1	YiiX family permuted papain-like enzyme	-
DQM96_RS23370 (NCTC9966_04462)	rpmE	4470509..4470721 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
DQM96_RS23375 (NCTC9966_04463)	priA	4470924..4473122 (+)	2199	WP_073544816.1	primosomal protein N'	Machinery gene
DQM96_RS23380 (NCTC9966_04464)	cytR	4473278..4474303 (+)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
DQM96_RS23385 (NCTC9966_04465)	ftsN	4474395..4475354 (+)	960	WP_000068828.1	cell division protein FtsN	-
DQM96_RS23390 (NCTC9966_04466)	hslV	4475447..4475977 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
DQM96_RS23395 (NCTC9966_04467)	hslU	4475987..4477318 (+)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
DQM96_RS23400 (NCTC9966_04468)	menA	4477385..4478311 (+)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
DQM96_RS23405 (NCTC9966_04469)	rraA	4478404..4478889 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
DQM96_RS23410 (NCTC9966_04470)	zapB	4478974..4479219 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=1015435 DQM96_RS23380 WP_000644904.1 4473278..4474303(+) (cytR) [Escherichia coli strain NCTC9966]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=1015435 DQM96_RS23380 WP_000644904.1 4473278..4474303(+) (cytR) [Escherichia coli strain NCTC9966]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAG
CTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628