Detailed information NTG1015362

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ABXJ17_RS14710
• Genome accession: NZ_CP159684
• Coordinates: 3025340..3026140 (+)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain Z173-1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3020340..3031140

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABXJ17_RS14675 (ABXJ17_14675)	gspH	3020511..3021026 (+)	516	WP_004191951.1	type II secretion system minor pseudopilin GspH	-
ABXJ17_RS14680 (ABXJ17_14680)	gspI	3021023..3021388 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
ABXJ17_RS14685 (ABXJ17_14685)	gspJ	3021385..3021981 (+)	597	WP_009309266.1	type II secretion system minor pseudopilin GspJ	-
ABXJ17_RS14690 (ABXJ17_14690)	gspK	3021978..3022964 (+)	987	WP_110237121.1	type II secretion system minor pseudopilin GspK	-
ABXJ17_RS14695 (ABXJ17_14695)	gspL	3022951..3024144 (+)	1194	WP_038432093.1	type II secretion system protein GspL	-
ABXJ17_RS14700 (ABXJ17_14700)	-	3024137..3024607 (+)	471	WP_100112094.1	type II secretion system protein M	-
ABXJ17_RS14705 (ABXJ17_14705)	-	3024597..3025343 (+)	747	WP_031588870.1	type II secretion system protein N	-
ABXJ17_RS14710 (ABXJ17_14710)	pilD	3025340..3026140 (+)	801	WP_004145898.1	A24 family peptidase	Machinery gene
ABXJ17_RS14715 (ABXJ17_14715)	hrpB	3026188..3028617 (-)	2430	WP_049109826.1	ATP-dependent helicase HrpB	-
ABXJ17_RS14720 (ABXJ17_14720)	thpR	3028690..3029226 (+)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
ABXJ17_RS14725 (ABXJ17_14725)	sfsA	3029226..3029942 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
ABXJ17_RS14730 (ABXJ17_14730)	dksA	3030105..3030560 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=1015362 ABXJ17_RS14710 WP_004145898.1 3025340..3026140(+) (pilD) [Klebsiella pneumoniae strain Z173-1]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=1015362 ABXJ17_RS14710 WP_004145898.1 3025340..3026140(+) (pilD) [Klebsiella pneumoniae strain Z173-1]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425