Detailed information NTG1015334

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ABXJ27_RS05185
• Genome accession: NZ_CP159682
• Coordinates: 1090323..1091123 (+)
• Length: 266 a.a.
• NCBI ID: WP_023319753.1
• Uniprot ID: -
• Organism: Klebsiella quasipneumoniae strain Z173-2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1085323..1096123

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABXJ27_RS05150 (ABXJ27_05150)	gspH	1085476..1085991 (+)	516	WP_004204416.1	type II secretion system minor pseudopilin GspH	-
ABXJ27_RS05155 (ABXJ27_05155)	gspI	1085988..1086353 (+)	366	WP_004204415.1	type II secretion system minor pseudopilin GspI	-
ABXJ27_RS05160 (ABXJ27_05160)	gspJ	1086350..1086946 (+)	597	WP_032455570.1	type II secretion system minor pseudopilin GspJ	-
ABXJ27_RS05165 (ABXJ27_05165)	gspK	1086943..1087923 (+)	981	WP_004204412.1	type II secretion system minor pseudopilin GspK	-
ABXJ27_RS05170 (ABXJ27_05170)	gspL	1087916..1089112 (+)	1197	WP_032455569.1	type II secretion system protein GspL	-
ABXJ27_RS05175 (ABXJ27_05175)	-	1089105..1089590 (+)	486	WP_004204409.1	type II secretion system protein M	-
ABXJ27_RS05180 (ABXJ27_05180)	-	1089580..1090308 (+)	729	WP_032455568.1	type II secretion system protein N	-
ABXJ27_RS05185 (ABXJ27_05185)	pilD	1090323..1091123 (+)	801	WP_023319753.1	A24 family peptidase	Machinery gene
ABXJ27_RS05190 (ABXJ27_05190)	hrpB	1091171..1093600 (-)	2430	WP_032455567.1	ATP-dependent helicase HrpB	-
ABXJ27_RS05195 (ABXJ27_05195)	thpR	1093673..1094209 (+)	537	WP_004204405.1	RNA 2',3'-cyclic phosphodiesterase	-
ABXJ27_RS05200 (ABXJ27_05200)	sfsA	1094209..1094925 (+)	717	WP_032455566.1	DNA/RNA nuclease SfsA	-
ABXJ27_RS05205 (ABXJ27_05205)	dksA	1095088..1095543 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29352.89 Da
• Isoelectric Point: 8.8894

>NTDB_id=1015334 ABXJ27_RS05185 WP_023319753.1 1090323..1091123(+) (pilD) [Klebsiella quasipneumoniae strain Z173-2]
MTTLAALSLHFPLIWYGFLLLFGLALGSFYNVVIYRLPRMLAQTADDEPLTLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQARISWSYPLTELTTGLLFILAGALLAPGLALAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQALPQVLLFASASGLTWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGVFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=1015334 ABXJ27_RS05185 WP_023319753.1 1090323..1091123(+) (pilD) [Klebsiella quasipneumoniae strain Z173-2]
ATGACGACATTAGCCGCATTATCGCTGCATTTCCCTCTTATCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAACGTGGTGATCTACCGTCTGCCGCGCATGCTGGCCCAGACCGCGGACGACGAGCCGCTAACCCTCAGCA
CGCCGGGCTCATCCTGTCCGCAGTGTCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGCTTCCTCTGGCTA
GGCCGTCGCGCCCGCTGCTGTCAGGCGCGCATCTCGTGGAGCTATCCGCTGACCGAGCTGACCACCGGCCTGCTGTTTAT
CCTCGCGGGGGCGCTGCTCGCACCGGGACTGGCGCTGGCGGGCGGCCTGGTGCTGCTCTCCTTTCTGCTGATACTGGCGC
GGATTGATGCCCGGACCCAGCTGCTGCCCGATCGCCTGACCCTGCCCCTGCTGTGGGCCGGACTGCTGTTTAATCTTAAC
GAGGTGTACATTGCGCTGCCGGACGCGGTCGCCGGGGCGATGGCTGGTTATCTGGCACTGTGGTCGGTCTATTGGCTGTT
CCGCCTGCTGACCGGCAAAGAGGCTCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGCTCTGCCGCAGGTGCTGTTGTTCGCCTCGGCCAGCGGGCTGACGTGGACCCTGCTGCAGCGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCGGGAGGGGGCGTTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-230)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	45.818	100	0.474
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	44.867	98.872	0.444
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425