Detailed information NTG1015310

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ABXJ37_RS03765
• Genome accession: NZ_CP159664
• Coordinates: 793781..794581 (-)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain Z173-5
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 788781..799581

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABXJ37_RS03745 (ABXJ37_03745)	dksA	789361..789816 (-)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-
ABXJ37_RS03750 (ABXJ37_03750)	sfsA	789979..790695 (-)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
ABXJ37_RS03755 (ABXJ37_03755)	thpR	790695..791231 (-)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
ABXJ37_RS03760 (ABXJ37_03760)	hrpB	791304..793733 (+)	2430	WP_023302300.1	ATP-dependent helicase HrpB	-
ABXJ37_RS03765 (ABXJ37_03765)	pilD	793781..794581 (-)	801	WP_004145898.1	A24 family peptidase	Machinery gene
ABXJ37_RS03770 (ABXJ37_03770)	-	794578..795324 (-)	747	WP_004145897.1	type II secretion system protein N	-
ABXJ37_RS03775 (ABXJ37_03775)	-	795314..795799 (-)	486	WP_004145896.1	type II secretion system protein M	-
ABXJ37_RS03780 (ABXJ37_03780)	gspL	795792..796988 (-)	1197	WP_114264104.1	type II secretion system protein GspL	-
ABXJ37_RS03785 (ABXJ37_03785)	gspK	796975..797961 (-)	987	WP_325941893.1	type II secretion system minor pseudopilin GspK	-
ABXJ37_RS03790 (ABXJ37_03790)	gspJ	797958..798554 (-)	597	WP_004145893.1	type II secretion system minor pseudopilin GspJ	-
ABXJ37_RS03795 (ABXJ37_03795)	gspI	798551..798916 (-)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
ABXJ37_RS03800 (ABXJ37_03800)	gspH	798919..799428 (-)	510	WP_021441218.1	type II secretion system minor pseudopilin GspH	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=1015310 ABXJ37_RS03765 WP_004145898.1 793781..794581(-) (pilD) [Klebsiella pneumoniae strain Z173-5]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=1015310 ABXJ37_RS03765 WP_004145898.1 793781..794581(-) (pilD) [Klebsiella pneumoniae strain Z173-5]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425