Detailed information NTG1015291

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ABXJ23_RS07825
• Genome accession: NZ_CP159661
• Coordinates: 1419135..1419935 (-)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain Z173-7
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1414135..1424935

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABXJ23_RS07805 (ABXJ23_07805)	dksA	1414715..1415170 (-)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-
ABXJ23_RS07810 (ABXJ23_07810)	sfsA	1415333..1416049 (-)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
ABXJ23_RS07815 (ABXJ23_07815)	thpR	1416049..1416585 (-)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
ABXJ23_RS07820 (ABXJ23_07820)	hrpB	1416658..1419087 (+)	2430	WP_049109826.1	ATP-dependent helicase HrpB	-
ABXJ23_RS07825 (ABXJ23_07825)	pilD	1419135..1419935 (-)	801	WP_004145898.1	A24 family peptidase	Machinery gene
ABXJ23_RS07830 (ABXJ23_07830)	-	1419932..1420678 (-)	747	WP_031588870.1	type II secretion system protein N	-
ABXJ23_RS07835 (ABXJ23_07835)	-	1420668..1421138 (-)	471	WP_100112094.1	type II secretion system protein M	-
ABXJ23_RS07840 (ABXJ23_07840)	gspL	1421131..1422324 (-)	1194	WP_038432093.1	type II secretion system protein GspL	-
ABXJ23_RS07845 (ABXJ23_07845)	gspK	1422311..1423297 (-)	987	WP_110237121.1	type II secretion system minor pseudopilin GspK	-
ABXJ23_RS07850 (ABXJ23_07850)	gspJ	1423294..1423890 (-)	597	WP_009309266.1	type II secretion system minor pseudopilin GspJ	-
ABXJ23_RS07855 (ABXJ23_07855)	gspI	1423887..1424252 (-)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
ABXJ23_RS07860 (ABXJ23_07860)	gspH	1424249..1424764 (-)	516	WP_004191951.1	type II secretion system minor pseudopilin GspH	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=1015291 ABXJ23_RS07825 WP_004145898.1 1419135..1419935(-) (pilD) [Klebsiella pneumoniae strain Z173-7]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=1015291 ABXJ23_RS07825 WP_004145898.1 1419135..1419935(-) (pilD) [Klebsiella pneumoniae strain Z173-7]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425