Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABXJ33_RS13270 Genome accession   NZ_CP159629
Coordinates   2723257..2723823 (-) Length   188 a.a.
NCBI ID   WP_033626857.1    Uniprot ID   -
Organism   Enterococcus faecalis strain Z217-3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2718257..2728823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXJ33_RS13250 (ABXJ33_13250) dnaB 2718713..2720080 (-) 1368 WP_002381331.1 replicative DNA helicase -
  ABXJ33_RS13255 (ABXJ33_13255) rplI 2720353..2720805 (-) 453 WP_002356023.1 50S ribosomal protein L9 -
  ABXJ33_RS13260 (ABXJ33_13260) - 2720811..2722835 (-) 2025 WP_002363542.1 DHH family phosphoesterase -
  ABXJ33_RS13265 (ABXJ33_13265) rpsR 2722992..2723231 (-) 240 WP_002356021.1 30S ribosomal protein S18 -
  ABXJ33_RS13270 (ABXJ33_13270) ssb 2723257..2723823 (-) 567 WP_033626857.1 single-stranded DNA-binding protein Machinery gene
  ABXJ33_RS13275 (ABXJ33_13275) rpsF 2723868..2724170 (-) 303 WP_354017684.1 30S ribosomal protein S6 -
  ABXJ33_RS13280 (ABXJ33_13280) gyrA 2724345..2726846 (-) 2502 WP_002379833.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20623.25 Da        Isoelectric Point: 4.6010

>NTDB_id=1015022 ABXJ33_RS13270 WP_033626857.1 2723257..2723823(-) (ssb) [Enterococcus faecalis strain Z217-3]
MINNVVLVGRLTKDPDLRYTASGSAVATFTLAVNRNFTNQNGDREADFINCVIWRKPAETMANYARKGTLLGVVGRIQTR
NYENQQGQRVYVTEVVCENFQLLESRSASEQRGTGGGSFNNNENGYQSQNRSFGNNYAGSGFNNNNNSFNPSSSQSQNNN
GMPDFDKDSDPFGGSGSSIDISDDDLPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=1015022 ABXJ33_RS13270 WP_033626857.1 2723257..2723823(-) (ssb) [Enterococcus faecalis strain Z217-3]
ATGATTAATAACGTTGTATTAGTCGGAAGATTGACAAAAGATCCTGACTTACGTTACACCGCTAGTGGTTCAGCTGTTGC
GACCTTTACACTTGCTGTAAACCGTAACTTTACGAATCAAAATGGTGATCGTGAAGCAGACTTTATCAACTGTGTGATTT
GGCGTAAACCCGCAGAAACAATGGCTAATTATGCCCGTAAAGGTACATTATTAGGTGTTGTCGGAAGAATTCAAACTCGT
AACTACGAGAACCAACAAGGTCAACGTGTCTACGTAACTGAAGTGGTTTGTGAAAACTTCCAATTGTTAGAATCTCGTTC
TGCTTCAGAACAAAGAGGAACTGGCGGCGGTAGCTTTAATAACAACGAAAATGGTTATCAATCACAAAATCGTAGCTTTG
GTAATAACTATGCCGGTTCTGGATTTAATAACAACAACAATAGTTTCAATCCATCATCTTCTCAGTCGCAAAACAATAAC
GGTATGCCTGATTTCGATAAAGATTCTGATCCATTTGGTGGCTCAGGTTCATCTATCGACATTTCAGATGATGATTTACC
ATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.686

100

0.606
  ssbA Bacillus subtilis subsp. subtilis str. 168

53.927

100

0.548

Multiple sequence alignment