Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   ABV520_RS07945 Genome accession   NZ_CP159584
Coordinates   1764985..1765791 (+) Length   268 a.a.
NCBI ID   WP_100152195.1    Uniprot ID   -
Organism   Snodgrassella alvi strain Acer03     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1759985..1770791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABV520_RS07930 (ABV520_17120) - 1762820..1762969 (+) 150 WP_370386520.1 hypothetical protein -
  ABV520_RS07935 (ABV520_06555) pgeF 1763055..1763849 (-) 795 WP_370386521.1 peptidoglycan editing factor PgeF -
  ABV520_RS07940 (ABV520_06560) rluD 1763862..1764986 (-) 1125 WP_370386522.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ABV520_RS07945 (ABV520_06565) comL 1764985..1765791 (+) 807 WP_100152195.1 outer membrane protein assembly factor BamD Machinery gene
  ABV520_RS07950 (ABV520_17125) speD 1766181..1766546 (-) 366 WP_370386523.1 adenosylmethionine decarboxylase -
  ABV520_RS07955 (ABV520_17130) - 1766546..1768408 (-) 1863 WP_370386524.1 DUF4178 domain-containing protein -
  ABV520_RS07960 (ABV520_17135) - 1768417..1769448 (-) 1032 WP_370386525.1 SPFH domain-containing protein -
  ABV520_RS07965 (ABV520_06615) - 1769477..1769875 (-) 399 WP_100139677.1 DUF350 domain-containing protein -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 31068.89 Da        Isoelectric Point: 6.0347

>NTDB_id=1014693 ABV520_RS07945 WP_100152195.1 1764985..1765791(+) (comL) [Snodgrassella alvi strain Acer03]
MKNLFLAVALGLLLSACASTSTVDKDSQITQDWSVQRLYNEAHDELMHRNYTHAEKLYEILQSRFPYGSYAEQAQLDTAY
AYYKDDENDKALAAIEQFQRLYPQHPNMDYALYLKALIQLNEDKSFVNKLAKQDWSDRDPKANREAYTTFAQLVEYFPQS
KYAADARDKMQKLLDALGGNELSVARYYMKRGAWLAAVGRAQTVISQYQNTPNVEEALAIMVSAYEKLGEQKLSDDTKRV
LAQNFPNSPYLQSPWQDHNAIPWWRYWK

Nucleotide


Download         Length: 807 bp        

>NTDB_id=1014693 ABV520_RS07945 WP_100152195.1 1764985..1765791(+) (comL) [Snodgrassella alvi strain Acer03]
ATGAAAAATTTGTTTTTGGCGGTGGCCTTAGGCCTTTTACTGAGTGCCTGTGCCAGCACAAGTACGGTCGATAAGGATTC
CCAGATTACTCAGGACTGGTCTGTTCAGCGTCTGTATAATGAAGCACACGATGAGCTGATGCATCGTAATTATACTCATG
CAGAGAAATTATACGAAATTCTGCAGTCTCGTTTCCCGTATGGTTCGTATGCGGAGCAGGCTCAGCTTGACACAGCATAT
GCTTATTATAAAGATGATGAGAATGATAAAGCGCTGGCGGCAATTGAACAGTTTCAGCGTTTGTATCCGCAACACCCCAA
TATGGATTACGCTTTGTATTTGAAAGCACTGATTCAGCTGAATGAGGATAAATCCTTTGTTAATAAGCTGGCCAAACAAG
ATTGGTCTGACCGCGACCCGAAAGCTAACCGGGAAGCTTATACCACTTTTGCACAACTAGTAGAATATTTCCCTCAAAGT
AAATATGCTGCCGATGCTCGCGATAAGATGCAGAAACTACTGGATGCGCTTGGCGGGAATGAGCTTTCAGTAGCACGTTA
TTATATGAAACGCGGTGCATGGCTGGCGGCTGTTGGCCGTGCACAGACGGTTATTTCTCAATACCAGAATACGCCTAATG
TGGAGGAAGCGCTGGCTATTATGGTTTCTGCGTATGAAAAACTGGGTGAGCAGAAGCTCAGTGATGATACTAAGCGCGTT
CTGGCACAGAATTTTCCAAATAGCCCGTATCTGCAATCTCCGTGGCAGGATCATAATGCCATTCCATGGTGGCGTTACTG
GAAGTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

68.165

99.627

0.679
  comL Neisseria gonorrhoeae MS11

67.79

99.627

0.675

Multiple sequence alignment