Detailed information NTG1014680

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: ABV520_RS02385
• Genome accession: NZ_CP159584
• Coordinates: 526647..528119 (+)
• Length: 490 a.a.
• NCBI ID: WP_367432556.1
• Uniprot ID: -
• Organism: Snodgrassella alvi strain Acer03
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 521647..533119

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABV520_RS02375 (ABV520_15890)	parC	522755..525073 (+)	2319	WP_370386887.1	DNA topoisomerase IV subunit A	-
ABV520_RS02380 (ABV520_15895)	-	525080..526654 (+)	1575	WP_267390618.1	ATP-binding protein	-
ABV520_RS02385 (ABV520_13515)	pilR	526647..528119 (+)	1473	WP_367432556.1	sigma-54 dependent transcriptional regulator	Regulator
ABV520_RS02390 (ABV520_13520)	-	528131..528880 (+)	750	WP_370386888.1	class I SAM-dependent methyltransferase	-
ABV520_RS02395 (ABV520_13525)	-	528951..529928 (+)	978	WP_370386889.1	hypothetical protein	-
ABV520_RS02400 (ABV520_15900)	amgK	529982..530986 (-)	1005	WP_370386890.1	N-acetylmuramate/N-acetylglucosamine kinase AmgK	-

Sequence

Protein

• Length: 490 a.a.
• Molecular weight: 54559.17 Da
• Isoelectric Point: 6.0374

>NTDB_id=1014680 ABV520_RS02385 WP_367432556.1 526647..528119(+) (pilR) [Snodgrassella alvi strain Acer03]
MNSQVELKKPVLVIDDEADIRDLMELTLIKMGLSVQTAAGVAEAKKALRNHAFSLVLTDMRMPDGSGLEIVDYITEHNLD
IPIAVITAYGNAVQAVQALKNGAFDYLQKPITLAQLRTLVKSVLTINHSSDTDTITKAATTTKQTEVKSQNVSEPGRGNQ
SAAQERLLGHSPLIAEVRQLISKLAKSNVPVYIAGESGSGKEQAARSIHEQSARKDKAFVAVNCGAIPEALMESEFFGYK
KGSFTGADSDRAGFFQHADGGTLFLDEVADLPLSMQVKLLRAIQERAVRRIGEMEEKQVDVRLICATHKDLNALVESGQF
RQDLFYRLNVVSITMPPLRELRDDLPELIQVLLQRILRDETMTLSPAAEQALLQYSYPGNFRELENILERAIALSKNHII
EVDDLQIQSLSFDNQRNLSVDSVRNSVGENPARTDFQFGHTQIQDYLDDVERHILQQALAQTRYNRTQAAKLLGISFRSM
RYRMERLGIA

Nucleotide

• Length: 1473 bp

>NTDB_id=1014680 ABV520_RS02385 WP_367432556.1 526647..528119(+) (pilR) [Snodgrassella alvi strain Acer03]
ATGAATAGTCAGGTAGAATTAAAAAAGCCAGTGCTGGTAATAGATGATGAAGCTGATATTCGTGATTTAATGGAATTAAC
CCTGATAAAAATGGGTTTATCTGTCCAGACCGCTGCTGGAGTGGCTGAAGCCAAAAAAGCATTACGTAATCATGCTTTCT
CTCTGGTACTTACTGATATGCGCATGCCAGACGGATCTGGTCTGGAAATTGTAGATTATATAACCGAACACAATCTGGAT
ATTCCGATTGCTGTGATTACTGCTTACGGTAATGCAGTGCAAGCAGTGCAGGCACTAAAAAATGGTGCTTTTGATTATCT
GCAAAAACCCATTACTCTGGCACAACTGCGCACATTAGTTAAATCTGTGCTGACAATCAACCATAGCTCTGATACCGACA
CCATCACTAAAGCAGCTACAACCACTAAGCAAACTGAAGTGAAATCCCAGAATGTTTCTGAGCCCGGTAGAGGGAACCAA
AGTGCTGCTCAAGAGCGACTGCTTGGTCACTCCCCTTTAATTGCTGAAGTGCGACAATTAATAAGCAAACTGGCTAAATC
CAATGTACCCGTCTATATTGCCGGGGAATCCGGTAGTGGAAAAGAGCAAGCAGCACGCAGTATTCATGAACAATCAGCTC
GTAAAGATAAAGCATTTGTTGCAGTCAATTGCGGGGCGATTCCTGAAGCATTGATGGAAAGTGAGTTTTTTGGTTATAAA
AAAGGGAGTTTTACCGGCGCAGACAGTGACAGAGCAGGATTTTTTCAGCATGCAGACGGTGGAACATTATTTTTGGATGA
AGTGGCTGATTTGCCATTATCCATGCAGGTAAAGCTTTTGCGTGCCATTCAGGAACGAGCTGTTCGCCGGATTGGTGAAA
TGGAAGAAAAGCAGGTTGATGTCCGTCTTATCTGTGCTACTCATAAAGACCTGAATGCTTTGGTAGAATCGGGACAATTT
CGGCAGGATTTGTTTTACCGTCTAAATGTGGTTTCTATAACCATGCCCCCCTTACGTGAATTACGTGATGATTTACCAGA
ACTGATTCAGGTTTTGTTGCAACGTATTCTACGTGATGAAACCATGACCCTGAGCCCGGCAGCTGAGCAAGCTTTATTGC
AATATAGCTATCCCGGCAATTTCCGCGAGCTGGAAAATATATTAGAACGAGCAATTGCTTTATCAAAAAATCATATTATC
GAAGTTGATGATTTACAGATTCAAAGTCTCTCATTTGATAATCAGCGTAATTTATCAGTAGATAGTGTCCGTAATTCTGT
CGGGGAAAATCCCGCAAGGACAGATTTTCAGTTTGGTCACACCCAGATTCAGGACTATCTCGACGATGTAGAACGTCATA
TTCTGCAGCAGGCGCTGGCACAAACCCGTTATAACCGTACACAAGCGGCAAAACTATTGGGAATCAGCTTTAGATCAATG
CGTTATCGGATGGAACGATTGGGTATTGCCTAA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (168-333)

• Bacterial regulatory protein, Fis family (HTH_8) (447-486)

• Response regulator receiver domain (Response_reg) (11-120)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	48.56	99.184	0.482
pilR	Acinetobacter baumannii strain A118	42.355	98.776	0.418