Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   JMX06_RS06570 Genome accession   NZ_LR890536
Coordinates   1364837..1365574 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain MSB1_8B isolate MSB1_8B     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1359837..1370574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMX06_RS06545 tyrA 1360211..1361332 (+) 1122 WP_022646000.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  JMX06_RS06550 pheA 1361375..1362535 (-) 1161 WP_000200129.1 bifunctional chorismate mutase/prephenate dehydratase -
  JMX06_RS06555 pheL 1362634..1362681 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  JMX06_RS06560 raiA 1362785..1363126 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  JMX06_RS06565 - 1363387..1364733 (-) 1347 WP_024181829.1 IS4-like element IS4 family transposase -
  JMX06_RS06570 comL 1364837..1365574 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  JMX06_RS06575 rluD 1365709..1366689 (+) 981 WP_022645998.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  JMX06_RS06580 yfiH 1366686..1367417 (+) 732 WP_000040130.1 purine nucleoside phosphorylase YfiH -
  JMX06_RS06585 clpC 1367547..1370120 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=1014528 JMX06_RS06570 WP_000197686.1 1364837..1365574(-) (comL) [Escherichia coli strain MSB1_8B isolate MSB1_8B]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=1014528 JMX06_RS06570 WP_000197686.1 1364837..1365574(-) (comL) [Escherichia coli strain MSB1_8B isolate MSB1_8B]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATCTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTCAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCTCGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGCCAATACACC
ACTGATGCAACCAAACGTCTGGTGTTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCAGAGTACTACACCGA
ACGTGGCGCATGGGTTGCCGTCGTCAACCGCGTCGAAGGCATGCTGCGTGACTACCCGGATACCCAAGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCTTACCGCCAGATGCAGATGAACGCTCAGGCTGAAAAAGTCGCAAAAATTATTGCCGCT
AACAGCAGCAACACTTAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment