Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   JMW09_RS06380 Genome accession   NZ_LR890405
Coordinates   1325617..1326354 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain MSB1_7C isolate MSB1_7C     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1320617..1331354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMW09_RS06350 yfiL 1320776..1321141 (-) 366 WP_001296308.1 DUF2799 domain-containing protein -
  JMW09_RS06355 aroF 1321350..1322420 (+) 1071 WP_001168043.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  JMW09_RS06360 tyrA 1322431..1323552 (+) 1122 WP_000225233.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  JMW09_RS06365 pheA 1323595..1324755 (-) 1161 WP_000200119.1 bifunctional chorismate mutase/prephenate dehydratase -
  JMW09_RS06370 pheL 1324854..1324901 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  JMW09_RS06375 raiA 1325005..1325346 (-) 342 WP_000178463.1 ribosome-associated translation inhibitor RaiA -
  JMW09_RS06380 comL 1325617..1326354 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  JMW09_RS06385 rluD 1326489..1327469 (+) 981 WP_000079106.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  JMW09_RS06390 yfiH 1327466..1328197 (+) 732 WP_000040163.1 purine nucleoside phosphorylase YfiH -
  JMW09_RS06395 clpC 1328327..1330900 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=1014189 JMW09_RS06380 WP_000197686.1 1325617..1326354(-) (comL) [Escherichia coli strain MSB1_7C isolate MSB1_7C]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=1014189 JMW09_RS06380 WP_000197686.1 1325617..1326354(-) (comL) [Escherichia coli strain MSB1_7C isolate MSB1_7C]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAACCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTCGATGACAGTGCACTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTACTATACAGA
ACGTGGTGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCTGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment