Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | ABWX03_RS10130 | Genome accession | NZ_CP159519 |
| Coordinates | 2148572..2148952 (-) | Length | 126 a.a. |
| NCBI ID | WP_000836911.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain NAB01B-R1 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2143572..2153952
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABWX03_RS10100 (ABWX03_10100) | tadA | 2143690..2144193 (-) | 504 | WP_000033178.1 | tRNA adenosine(34) deaminase TadA | - |
| ABWX03_RS10105 (ABWX03_10105) | - | 2144200..2145324 (-) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| ABWX03_RS10110 (ABWX03_10110) | ung | 2145321..2146034 (-) | 714 | WP_001177528.1 | uracil-DNA glycosylase | - |
| ABWX03_RS10115 (ABWX03_10115) | - | 2146085..2146681 (-) | 597 | WP_000908452.1 | 6-carboxytetrahydropterin synthase | - |
| ABWX03_RS10120 (ABWX03_10120) | gspK | 2146912..2147871 (-) | 960 | WP_000301476.1 | type II secretion system minor pseudopilin GspK | - |
| ABWX03_RS10125 (ABWX03_10125) | xcpW | 2147871..2148572 (-) | 702 | WP_000594589.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| ABWX03_RS10130 (ABWX03_10130) | xcpV | 2148572..2148952 (-) | 381 | WP_000836911.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| ABWX03_RS10135 (ABWX03_10135) | - | 2148942..2149496 (-) | 555 | WP_000841373.1 | type II secretion system protein | - |
| ABWX03_RS10140 (ABWX03_10140) | - | 2149506..2150114 (-) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| ABWX03_RS10145 (ABWX03_10145) | - | 2150152..2150925 (-) | 774 | WP_000497298.1 | TatD family hydrolase | - |
| ABWX03_RS10150 (ABWX03_10150) | - | 2150943..2151284 (-) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| ABWX03_RS10155 (ABWX03_10155) | - | 2151296..2152276 (-) | 981 | WP_001075411.1 | DNA polymerase III subunit delta' | - |
| ABWX03_RS10160 (ABWX03_10160) | kdsB | 2152288..2153049 (-) | 762 | WP_000680697.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13975.20 Da Isoelectric Point: 9.8004
>NTDB_id=1014138 ABWX03_RS10130 WP_000836911.1 2148572..2148952(-) (xcpV) [Acinetobacter baumannii strain NAB01B-R1]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=1014138 ABWX03_RS10130 WP_000836911.1 2148572..2148952(-) (xcpV) [Acinetobacter baumannii strain NAB01B-R1]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
100 |
100 |
1 |