Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX   Type   Regulator
Locus tag   ABVR74_RS00645 Genome accession   NZ_CP159484
Coordinates   131348..131839 (+) Length   163 a.a.
NCBI ID   WP_353891724.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain CBA3648     
Function   activation of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 126348..136839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVR74_RS00630 (ABVR74_00630) rpsB 127240..128007 (+) 768 WP_010906340.1 30S ribosomal protein S2 -
  ABVR74_RS00635 (ABVR74_00635) tsf 128129..129157 (+) 1029 WP_015427183.1 translation elongation factor Ts -
  ABVR74_RS00640 (ABVR74_00640) ezrA 129362..131092 (+) 1731 WP_003132670.1 septation ring formation regulator EzrA -
  ABVR74_RS00645 (ABVR74_00645) comX 131348..131839 (+) 492 WP_353891724.1 sigma-70 family RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 19704.59 Da        Isoelectric Point: 5.6062

>NTDB_id=1013797 ABVR74_RS00645 WP_353891724.1 131348..131839(+) (comX) [Lactococcus lactis subsp. lactis strain CBA3648]
MTYYLEEEGFEILFSEMKPIVMKLMKQIRIRTWKIEDYLQEGMIILHLLLEEQSDGQKLHTKFKVKYHQRLIDELRRSYA
KKRSHDHFIGLDVYECSDWINSGDTSPDNEVVFNHLLAEVYEGLSAHYQDLLLRQMRGEELTRMQQYRLREKIKAILFSE
DEE

Nucleotide


Download         Length: 492 bp        

>NTDB_id=1013797 ABVR74_RS00645 WP_353891724.1 131348..131839(+) (comX) [Lactococcus lactis subsp. lactis strain CBA3648]
ATGACATATTACTTGGAAGAAGAGGGTTTTGAAATTCTATTTTCAGAAATGAAACCTATAGTCATGAAATTAATGAAACA
AATTCGCATTAGAACATGGAAAATAGAGGATTATCTTCAAGAGGGGATGATTATTTTACATCTTCTATTAGAAGAGCAGA
GCGATGGTCAAAAGCTGCATACAAAATTTAAGGTAAAGTATCATCAAAGATTAATAGATGAATTAAGACGAAGTTATGCA
AAGAAACGAAGCCATGACCATTTTATAGGTTTAGATGTTTATGAATGCTCAGACTGGATAAATTCAGGTGATACTAGTCC
AGATAATGAAGTGGTCTTCAATCATTTGCTGGCAGAAGTATATGAAGGTTTGAGCGCACATTATCAAGACTTACTACTTC
GACAAATGCGAGGAGAAGAACTAACTCGAATGCAACAGTATCGCCTTCGTGAAAAAATAAAGGCCATCTTATTTTCAGAA
GACGAAGAGTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX Lactococcus lactis subsp. lactis strain DGCC12653

97.546

100

0.975
  comX Lactococcus lactis subsp. cremoris KW2

75.46

100

0.755

Multiple sequence alignment