Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   JMV89_RS03930 Genome accession   NZ_LR890198
Coordinates   817840..818316 (-) Length   158 a.a.
NCBI ID   WP_001186726.1    Uniprot ID   -
Organism   Escherichia coli strain MINF_1D isolate MINF_1D     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 812840..823316
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMV89_RS03890 - 812895..813878 (-) 984 WP_001331698.1 KpsF/GutQ family sugar-phosphate isomerase -
  JMV89_RS03895 - 814689..814859 (-) 171 Protein_774 IS110 family transposase -
  JMV89_RS03900 - 815201..815770 (-) 570 WP_001290241.1 DUF4942 domain-containing protein -
  JMV89_RS03905 - 815867..816064 (-) 198 WP_000839281.1 DUF957 domain-containing protein -
  JMV89_RS03910 - 816076..816564 (-) 489 WP_000777541.1 DUF5983 family protein -
  JMV89_RS03915 - 816561..816935 (-) 375 WP_000854753.1 TA system toxin CbtA family protein -
  JMV89_RS03920 cbeA 817025..817393 (-) 369 WP_001278232.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  JMV89_RS03925 - 817556..817777 (-) 222 WP_000692316.1 DUF987 domain-containing protein -
  JMV89_RS03930 radC 817840..818316 (-) 477 WP_001186726.1 RadC family protein Machinery gene
  JMV89_RS03935 - 818332..818817 (-) 486 WP_001520165.1 antirestriction protein -
  JMV89_RS03940 - 818872..819690 (-) 819 WP_001520163.1 DUF932 domain-containing protein -
  JMV89_RS03945 - 819790..820023 (-) 234 WP_001119729.1 DUF905 family protein -
  JMV89_RS03950 - 820102..820557 (-) 456 WP_000581504.1 IrmA family protein -
  JMV89_RS03955 - 820633..823110 (-) 2478 WP_001350100.1 hypothetical protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17673.32 Da        Isoelectric Point: 7.2020

>NTDB_id=1013593 JMV89_RS03930 WP_001186726.1 817840..818316(-) (radC) [Escherichia coli strain MINF_1D isolate MINF_1D]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=1013593 JMV89_RS03930 WP_001186726.1 817840..818316(-) (radC) [Escherichia coli strain MINF_1D isolate MINF_1D]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAAATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCTCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGTGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment