Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   JMV89_RS03865 Genome accession   NZ_LR890198
Coordinates   805961..807166 (-) Length   401 a.a.
NCBI ID   WP_001161835.1    Uniprot ID   -
Organism   Escherichia coli strain MINF_1D isolate MINF_1D     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 800961..812166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMV89_RS03845 - 801023..802279 (+) 1257 WP_001259305.1 GDSL-type esterase/lipase family protein -
  JMV89_RS03850 neuC 802276..803451 (+) 1176 WP_000723250.1 UDP-N-acetylglucosamine 2-epimerase -
  JMV89_RS03855 - 803444..804592 (+) 1149 WP_000197080.1 DUF6716 putative glycosyltransferase -
  JMV89_RS03860 - 804582..805811 (+) 1230 WP_201520135.1 alpha-2,8-polysialyltransferase family protein -
  JMV89_RS03865 kpsS 805961..807166 (-) 1206 WP_001161835.1 capsular biosynthesis protein Regulator
  JMV89_RS03870 - 807201..809228 (-) 2028 WP_000579517.1 capsular polysaccharide biosynthesis protein -
  JMV89_RS03875 kdsB 809225..809965 (-) 741 WP_000030761.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  JMV89_RS03880 - 809975..811651 (-) 1677 WP_001331697.1 polysaccharide biosynthesis/export family protein -

Sequence

Protein


Download         Length: 401 a.a.        Molecular weight: 47858.21 Da        Isoelectric Point: 10.0398

>NTDB_id=1013592 JMV89_RS03865 WP_001161835.1 805961..807166(-) (kpsS) [Escherichia coli strain MINF_1D isolate MINF_1D]
MQGNALTVLLSGKKYLLLQGPMGPFFNDVAEWLESLGRNAVNVVFNGGDRFYCRHRQYLAYYQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPAPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFRGYLLMKTQVNWVYYGGNTTNCQHNI
Y

Nucleotide


Download         Length: 1206 bp        

>NTDB_id=1013592 JMV89_RS03865 WP_001161835.1 805961..807166(-) (kpsS) [Escherichia coli strain MINF_1D isolate MINF_1D]
ATGCAAGGTAATGCATTAACCGTTTTATTATCCGGTAAAAAATATCTGCTATTGCAGGGGCCGATGGGACCTTTTTTCAA
TGACGTCGCCGAATGGTTAGAGTCATTAGGACGTAACGCTGTGAATGTTGTATTCAACGGTGGGGATCGTTTTTACTGCC
GCCATCGACAATACCTGGCTTACTACCAAACGCCGAAAGAGTTCCCCGGATGGTTACGGGATCTCCACCGGCAATATGAC
TTTGATACCATCCTCTGCTTTGGTGACTGCCGCCCATTGCACAAAGAAGCAAAACGTTGGGCAAAGTCGAAAGGGATCCG
CTTTCTGGCATTTGAAGAAGGATATTTACGTCCGCAGTTTATTACTGTTGAAGAAGGCGGAGTGAACGCATATTCATCGC
TACCGCGCGATCCGGATTTTTATCGTAAGTTACCAGATATGCCTGCGCCGCACGTTGAGAACTTAAAACCTTCAACGATG
AAACGTATAGGTCATGCGATGTGGTATTACCTGATGGGTTGGCATTACCGTCATGAGTTCCCTCGCTACCGCCACCACAA
ATCGTTTTCCCCCTGGTATGAGGCTCGTTGCTGGGTTCGTGCATACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AGGTATTGCCGAGGTTAATGAACGAGCTGGACCAGCGTTATTATCTTGCCGTTTTGCAGGTGTATAACGATAGCCAGATT
CGTAACCACAGCAATTATAACGATGTGCGTGACTATATTAATGAAGTCATGTACTCATTTTCACGTAAAGCACCGAAAGA
AAGTTATTTGGTGATCAAGCACCATCCAATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAGCGGCTAAGTAAGG
AATATGGCTTAGGTGAGCGCGTCATTTATGTGCACGATCTCCCGATGCCGGAACTATTACGCCACGCAAAAGCGGTGGTG
ACGATTAACAGTACGGCGGGGATCTCTGCACTGATTCATAACAAACCACTCAAAGTGATGGGCAATGCCCTGTACGACAT
CAAGGGCTTGACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCCGATTTTAAACCGGATATGAAACTGTTTAAGAAGT
TTCGGGGGTATTTATTGATGAAGACGCAGGTTAATTGGGTTTATTATGGGGGGAACACAACAAACTGCCAACATAATATA
TATTAA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.846

97.007

0.387

Multiple sequence alignment