Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   N011_RS08120 Genome accession   NZ_CP159362
Coordinates   1781233..1781643 (-) Length   136 a.a.
NCBI ID   WP_024685311.1    Uniprot ID   A0AAU8LKW9
Organism   Pseudomonas syringae CC1417     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1776233..1786643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N011_RS08105 (N011_08105) - 1778149..1780140 (-) 1992 WP_235201030.1 methyl-accepting chemotaxis protein -
  N011_RS08110 (N011_08110) - 1780266..1780805 (-) 540 WP_024685310.1 chemotaxis protein CheW -
  N011_RS08115 (N011_08115) pilH 1780820..1781185 (-) 366 WP_004884368.1 twitching motility response regulator PilH -
  N011_RS08120 (N011_08120) pilG 1781233..1781643 (-) 411 WP_024685311.1 twitching motility response regulator PilG Regulator
  N011_RS08125 (N011_08125) gshB 1781888..1782847 (+) 960 WP_024685312.1 glutathione synthase -
  N011_RS08130 (N011_08130) - 1783144..1784046 (+) 903 WP_024684942.1 energy transducer TonB -
  N011_RS08135 (N011_08135) - 1784125..1784697 (+) 573 WP_024684941.1 YqgE/AlgH family protein -
  N011_RS08140 (N011_08140) ruvX 1784697..1785137 (+) 441 WP_024684940.1 Holliday junction resolvase RuvX -
  N011_RS08145 (N011_08145) pyrR 1785236..1785748 (+) 513 WP_024695864.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 14995.49 Da        Isoelectric Point: 8.5283

>NTDB_id=1013416 N011_RS08120 WP_024685311.1 1781233..1781643(-) (pilG) [Pseudomonas syringae CC1417]
MEQHPTALKVMVIDDSKTIRRTAETLLKNAGCDVITAVDGFDALAKIADNHPRIIFVDIMMPRLDGYQTCALIKNNRAFK
STPVIMLSSKDGLFDKAKGRIVGSDQFLTKPFSKEELLSAIKAHVPSFVAAEQHIP

Nucleotide


Download         Length: 411 bp        

>NTDB_id=1013416 N011_RS08120 WP_024685311.1 1781233..1781643(-) (pilG) [Pseudomonas syringae CC1417]
ATGGAACAACACCCCACAGCCCTGAAAGTCATGGTCATCGATGACTCGAAGACCATCCGCCGCACCGCCGAAACGCTGCT
GAAAAACGCAGGATGTGACGTCATCACGGCGGTGGACGGTTTCGACGCCCTGGCCAAGATTGCCGATAACCACCCGCGCA
TCATATTCGTCGATATCATGATGCCGCGCCTGGACGGCTATCAGACCTGCGCCCTGATCAAGAACAACCGTGCCTTCAAG
TCCACACCTGTCATCATGCTGTCCTCCAAGGATGGGCTGTTCGACAAGGCCAAAGGACGAATCGTAGGTTCTGATCAGTT
TTTGACCAAGCCTTTCAGCAAGGAAGAACTGCTCAGCGCGATCAAGGCTCATGTGCCGAGCTTCGTTGCAGCAGAACAAC
ATATACCGTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

74.803

93.382

0.699
  vicR Streptococcus mutans UA159

41.88

86.029

0.36

Multiple sequence alignment