Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ABVJ71_RS10805 Genome accession   NZ_CP159358
Coordinates   2086846..2088225 (-) Length   459 a.a.
NCBI ID   WP_353854028.1    Uniprot ID   -
Organism   Bacillus sp. Bos-x628     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2081846..2093225
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVJ71_RS10785 ispF 2083325..2083801 (-) 477 WP_353854025.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  ABVJ71_RS10790 ispD 2083805..2084494 (-) 690 WP_353854026.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  ABVJ71_RS10795 - 2084508..2085608 (-) 1101 WP_353856638.1 PIN/TRAM domain-containing protein -
  ABVJ71_RS10800 disA 2085764..2086843 (-) 1080 WP_353854027.1 DNA integrity scanning diadenylate cyclase DisA -
  ABVJ71_RS10805 radA 2086846..2088225 (-) 1380 WP_353854028.1 DNA repair protein RadA Machinery gene
  ABVJ71_RS10810 clpC 2088318..2090753 (-) 2436 WP_353854029.1 ATP-dependent protease ATP-binding subunit ClpC Regulator
  ABVJ71_RS10815 - 2090750..2091841 (-) 1092 WP_353854030.1 protein arginine kinase -
  ABVJ71_RS10820 - 2091846..2092403 (-) 558 WP_353854031.1 UvrB/UvrC motif-containing protein -
  ABVJ71_RS10825 - 2092418..2092882 (-) 465 WP_353854032.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 50050.51 Da        Isoelectric Point: 7.1658

>NTDB_id=1013385 ABVJ71_RS10805 WP_353854028.1 2086846..2088225(-) (radA) [Bacillus sp. Bos-x628]
MAKTKSKFICQSCGYESAKWMGKCPGCGTWNSMTEEVIRKEPANRRSAFNHSVQTVHQPSPISAIETSEEPRIKTNLEEF
NRVLGSGIVKGSLVLIGGDPGIGKSTLLLQVSAQLSDQKQNVLYISGEESIKQTKLRADRLGIESASLHVLAETDMEYIT
SAIQEMKPAFVVVDSIQTVYQSDITSAPGSVSQVRECTAQLMKIAKTNGIPIFIVGHVTKEGSIAGPRLLEHMVDTVLYF
EGERHHTFRILRAVKNRFGSTNELGIFEMREEGLSEVLNPSEIFLEERSAGVSGSCVVASMEGTRPVLVEIQALIAPTSF
GNPRRMATGLDHNRVSLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAIAVSIASSFKDAAPHQADCFIGEVGLT
GEVRRVSRIEQRVQEATKLGFKRMFIPQANMDGWKKPRGIELVGVENVAEALRISLGGS

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=1013385 ABVJ71_RS10805 WP_353854028.1 2086846..2088225(-) (radA) [Bacillus sp. Bos-x628]
ATGGCAAAGACAAAATCGAAATTTATATGCCAATCATGCGGCTATGAATCAGCCAAGTGGATGGGGAAATGTCCCGGCTG
CGGCACATGGAACAGTATGACAGAAGAGGTCATTCGCAAAGAGCCAGCAAACCGACGAAGTGCTTTTAACCATTCTGTAC
AAACCGTCCATCAACCTTCACCAATATCTGCAATTGAAACATCAGAAGAACCCCGAATCAAAACAAATTTAGAAGAATTT
AACCGAGTATTAGGAAGTGGAATTGTCAAAGGCTCTCTTGTTCTGATTGGCGGAGACCCTGGTATTGGTAAATCCACATT
GTTATTACAAGTGTCAGCACAGCTCTCAGACCAGAAACAGAATGTGTTATACATATCTGGAGAGGAGTCAATCAAACAAA
CCAAACTGAGAGCAGACCGTCTTGGCATTGAAAGTGCCTCTTTACATGTTTTGGCTGAAACCGATATGGAGTATATAACG
TCTGCTATACAAGAGATGAAACCCGCTTTTGTTGTGGTGGATTCGATTCAAACAGTCTATCAAAGCGATATTACATCAGC
ACCTGGCTCTGTTTCTCAGGTGAGGGAGTGCACAGCTCAATTGATGAAGATTGCGAAGACGAACGGAATTCCTATTTTTA
TCGTTGGTCACGTGACCAAAGAAGGATCGATTGCAGGACCGCGCCTTTTAGAGCATATGGTTGACACGGTTCTTTATTTT
GAAGGAGAGCGGCATCATACATTTCGTATCCTAAGAGCAGTAAAAAACCGGTTTGGTTCCACAAATGAATTAGGAATTTT
TGAAATGAGAGAGGAAGGGCTCTCGGAAGTATTAAACCCGTCTGAAATTTTTCTAGAAGAGCGGTCAGCGGGTGTATCAG
GTTCGTGTGTCGTTGCATCAATGGAAGGAACAAGACCCGTTCTTGTGGAAATACAAGCATTAATTGCGCCAACAAGCTTT
GGGAATCCGCGGAGAATGGCAACAGGTCTTGATCATAATCGTGTGTCATTACTGATGGCAGTCTTAGAAAAACGTGTAGG
ATTGTTGCTGCAGAATCAGGATGCGTATTTAAAAGTCGCTGGCGGTGTGAAGCTTGATGAACCAGCCATTGACCTAGCAA
TTGCCGTCAGTATTGCATCAAGCTTTAAGGATGCAGCACCGCATCAAGCGGATTGCTTTATAGGAGAAGTCGGTCTGACT
GGAGAAGTCAGAAGAGTATCAAGAATTGAACAGCGTGTACAGGAAGCTACTAAACTAGGGTTTAAGCGAATGTTCATTCC
TCAGGCGAATATGGATGGATGGAAAAAGCCTAGAGGGATTGAGTTAGTCGGTGTAGAAAATGTAGCGGAGGCACTTCGTA
TTTCACTAGGGGGATCATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(365-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(66-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

86.681

99.782

0.865
  radA Streptococcus mitis NCTC 12261

61.369

98.693

0.606
  radA Streptococcus pneumoniae Rx1

61.369

98.693

0.606
  radA Streptococcus pneumoniae D39

61.369

98.693

0.606
  radA Streptococcus pneumoniae R6

61.369

98.693

0.606
  radA Streptococcus pneumoniae TIGR4

61.369

98.693

0.606
  radA Streptococcus mitis SK321

61.369

98.693

0.606

Multiple sequence alignment