Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   ABVJ71_RS06700 Genome accession   NZ_CP159358
Coordinates   1281121..1281699 (-) Length   192 a.a.
NCBI ID   WP_353856194.1    Uniprot ID   -
Organism   Bacillus sp. Bos-x628     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1276121..1286699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVJ71_RS06665 - 1276309..1276731 (-) 423 WP_353856188.1 BlaI/MecI/CopY family transcriptional regulator -
  ABVJ71_RS06670 - 1277026..1278168 (+) 1143 WP_353856590.1 AbrB family transcriptional regulator -
  ABVJ71_RS06675 lepB 1278207..1278716 (-) 510 WP_353856189.1 signal peptidase I -
  ABVJ71_RS06680 - 1278716..1279333 (-) 618 WP_353856190.1 TVP38/TMEM64 family protein -
  ABVJ71_RS06685 - 1279485..1279847 (+) 363 WP_353856191.1 hypothetical protein -
  ABVJ71_RS06690 - 1279968..1280243 (-) 276 WP_353856192.1 barstar family protein -
  ABVJ71_RS06695 - 1280336..1280818 (-) 483 WP_353856193.1 hypothetical protein -
  ABVJ71_RS06700 comK 1281121..1281699 (-) 579 WP_353856194.1 competence protein ComK Regulator
  ABVJ71_RS06705 - 1281989..1282222 (+) 234 WP_353856195.1 IDEAL domain-containing protein -
  ABVJ71_RS06710 - 1282282..1283142 (-) 861 WP_353856196.1 SDR family oxidoreductase -
  ABVJ71_RS06715 - 1283285..1284817 (+) 1533 WP_353856197.1 FAD-dependent oxidoreductase -
  ABVJ71_RS06720 - 1284905..1286194 (+) 1290 WP_353856198.1 globin-coupled sensor protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22385.52 Da        Isoelectric Point: 8.2449

>NTDB_id=1013378 ABVJ71_RS06700 WP_353856194.1 1281121..1281699(-) (comK) [Bacillus sp. Bos-x628]
MSGISETPLDSYVINQTTMAILPIEEGKKVYSKVIEREKCFFVELKPLHIIERSCRFFGSSYAGRKAGTYEVTGISHKPP
IVIDSSNHLYFFPTFSSNRPQCGWISHKYIHTFQESSLGDTIVTFTNEQTVELDVSYKSFESQVHRTAYLRTKFQDRLDG
GLPKKQEFMLYPKEQQLNLVYDFILRELRNRY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=1013378 ABVJ71_RS06700 WP_353856194.1 1281121..1281699(-) (comK) [Bacillus sp. Bos-x628]
GTGTCAGGAATTAGTGAAACCCCTTTAGATTCATATGTCATTAACCAAACAACAATGGCGATCCTTCCAATCGAAGAAGG
GAAAAAAGTATATTCAAAAGTCATTGAAAGAGAGAAATGTTTTTTCGTTGAATTAAAGCCGTTGCACATTATTGAACGTA
GCTGCAGGTTCTTTGGTTCAAGCTATGCAGGCAGAAAAGCAGGAACGTACGAAGTAACGGGTATTTCACACAAACCCCCG
ATTGTGATTGACTCATCCAATCATCTGTATTTCTTTCCAACGTTTTCGTCCAATCGCCCTCAGTGCGGATGGATATCCCA
CAAATATATTCATACTTTTCAGGAATCGTCCCTTGGAGACACGATTGTCACCTTTACAAATGAGCAAACGGTCGAACTGG
ATGTCTCATATAAATCATTTGAGAGTCAGGTGCACCGGACAGCGTATCTTCGGACAAAATTTCAAGATCGTCTTGATGGA
GGTCTTCCTAAAAAACAAGAATTTATGCTGTATCCAAAAGAGCAACAGCTTAATCTTGTGTACGATTTTATTTTAAGAGA
ACTTCGTAATAGATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

61.458

100

0.615

Multiple sequence alignment