Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ABVJ71_RS04315 Genome accession   NZ_CP159358
Coordinates   824887..825789 (-) Length   300 a.a.
NCBI ID   WP_353855768.1    Uniprot ID   -
Organism   Bacillus sp. Bos-x628     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 819887..830789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVJ71_RS04300 xerC 820263..821180 (-) 918 WP_353855765.1 tyrosine recombinase XerC -
  ABVJ71_RS04305 trmFO 821243..822547 (-) 1305 WP_353855766.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  ABVJ71_RS04310 topA 822618..824693 (-) 2076 WP_353855767.1 type I DNA topoisomerase -
  ABVJ71_RS04315 dprA 824887..825789 (-) 903 WP_353855768.1 DNA-processing protein DprA Machinery gene
  ABVJ71_RS04320 sucD 825857..826759 (-) 903 WP_353855769.1 succinate--CoA ligase subunit alpha -
  ABVJ71_RS04325 sucC 826782..827942 (-) 1161 WP_353855770.1 ADP-forming succinate--CoA ligase subunit beta -
  ABVJ71_RS04330 - 828119..828394 (-) 276 WP_353855771.1 FlhB-like flagellar biosynthesis protein -
  ABVJ71_RS04335 - 828391..830130 (-) 1740 WP_353855772.1 glycosyltransferase -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34165.54 Da        Isoelectric Point: 8.5918

>NTDB_id=1013363 ABVJ71_RS04315 WP_353855768.1 824887..825789(-) (dprA) [Bacillus sp. Bos-x628]
MYNVSERMIFHRLKGLISPSLLTKWWKVDPELYINEEKHHFMQDRSLQTIDFTRLKQAEENEFPIFQRIVQAYLKQNIHM
IPITSSLYPDTLKNIYDPPPVLFLKGNVSYLNEEKSLGVVGTRLPSSYGKECVKKFVGELVKEDWMIVSGLAKGIDGLAH
KECIGQQGKTIGVVAGGFQHLYPKEHVKMAHYMGEHHLLLSEHPPYIKPEKWHFPMRNRLISALTKGTIVIQCKEKSGSL
ITAYQALEQGKEVFAVAGSIFDPNSSGPARLIQQGAKLVHSTKDILEEFSFNSVQYTEPL

Nucleotide


Download         Length: 903 bp        

>NTDB_id=1013363 ABVJ71_RS04315 WP_353855768.1 824887..825789(-) (dprA) [Bacillus sp. Bos-x628]
ATGTACAATGTGTCCGAAAGAATGATTTTTCATCGCTTAAAAGGCCTCATCTCACCCTCTTTGTTAACAAAATGGTGGAA
AGTCGATCCTGAGTTATATATAAATGAAGAAAAGCATCATTTCATGCAGGATCGATCATTACAAACAATCGATTTCACCC
GCTTAAAACAAGCCGAAGAAAACGAATTCCCCATTTTTCAACGCATCGTTCAAGCCTATTTAAAGCAAAACATTCACATG
ATTCCCATCACATCATCATTATATCCTGACACTTTAAAAAACATTTATGATCCTCCCCCTGTGTTATTCCTAAAAGGAAA
CGTATCATATTTAAATGAAGAAAAAAGTTTAGGTGTAGTGGGCACACGTTTGCCATCATCTTATGGAAAAGAATGTGTGA
AGAAATTTGTTGGTGAACTCGTCAAGGAAGATTGGATGATTGTCAGTGGTTTAGCAAAAGGAATTGATGGACTCGCCCAC
AAGGAGTGCATTGGGCAACAAGGGAAAACTATTGGTGTAGTGGCTGGCGGTTTTCAGCATTTGTATCCAAAGGAACATGT
GAAAATGGCTCACTACATGGGAGAACATCATTTGCTTTTGTCAGAGCATCCGCCATATATCAAACCAGAGAAGTGGCACT
TTCCGATGAGAAACCGTTTGATTAGTGCACTGACGAAAGGAACGATTGTCATCCAATGTAAAGAAAAGAGCGGTTCTTTG
ATTACAGCTTATCAAGCACTAGAGCAAGGAAAAGAAGTATTTGCTGTTGCCGGTTCTATCTTTGACCCTAACTCCTCTGG
TCCTGCAAGACTCATTCAACAAGGGGCAAAGCTCGTTCATTCGACAAAGGATATTTTAGAGGAATTCTCCTTTAACAGCG
TTCAATATACTGAACCTTTATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

54.325

96.333

0.523
  dprA Legionella pneumophila strain ERS1305867

39.016

100

0.397

Multiple sequence alignment