Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   ABVJ71_RS01560 Genome accession   NZ_CP159358
Coordinates   294404..295204 (+) Length   266 a.a.
NCBI ID   WP_353855291.1    Uniprot ID   -
Organism   Bacillus sp. Bos-x628     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 289404..300204
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVJ71_RS01540 - 289409..290257 (+) 849 WP_353855287.1 TlyA family RNA methyltransferase -
  ABVJ71_RS01545 argR 290426..290875 (+) 450 WP_353855288.1 transcriptional regulator ArgR -
  ABVJ71_RS01550 recN 290912..292645 (+) 1734 WP_353855289.1 DNA repair protein RecN Machinery gene
  ABVJ71_RS01555 spoIVB 292847..294124 (+) 1278 WP_353855290.1 SpoIVB peptidase -
  ABVJ71_RS01560 spo0A 294404..295204 (+) 801 WP_353855291.1 sporulation transcription factor Spo0A Regulator
  ABVJ71_RS01565 - 295609..296709 (+) 1101 WP_353855292.1 Rap family tetratricopeptide repeat protein -
  ABVJ71_RS01570 - 296940..297677 (+) 738 WP_353855293.1 glycerophosphodiester phosphodiesterase -
  ABVJ71_RS01575 - 297694..297954 (-) 261 WP_353855294.1 DUF2627 domain-containing protein -
  ABVJ71_RS01580 - 298104..300176 (+) 2073 WP_353855295.1 sigma-54-dependent Fis family transcriptional regulator -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29750.28 Da        Isoelectric Point: 6.3909

>NTDB_id=1013358 ABVJ71_RS01560 WP_353855291.1 294404..295204(+) (spo0A) [Bacillus sp. Bos-x628]
MEKIKVCVADDNRELVGLLTEYIEGQEDMEVLGVAYNGQECLTLFKDKEPDVLLLDIIMPHLDGLAVLERLRDSDMTKQP
SVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNGTQITHRSSSIQSSVLRNKPEPKRKNLDASITTII
HEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVS
MSKAKPTNSEFIAMVADRLRLEHRAS

Nucleotide


Download         Length: 801 bp        

>NTDB_id=1013358 ABVJ71_RS01560 WP_353855291.1 294404..295204(+) (spo0A) [Bacillus sp. Bos-x628]
GTGGAGAAAATTAAAGTGTGTGTAGCTGATGACAATCGAGAACTTGTTGGCCTTTTGACAGAGTACATTGAAGGACAAGA
AGATATGGAAGTACTTGGCGTGGCGTATAATGGTCAGGAGTGTCTGACGTTATTTAAAGATAAAGAGCCTGACGTTCTCC
TCTTAGATATTATCATGCCTCATTTAGACGGTCTTGCAGTACTTGAACGACTTCGTGATTCTGATATGACTAAACAGCCA
AGTGTTATTATGCTGACGGCGTTTGGACAAGAAGATGTGACGAAAAAGGCAGTCGATTTAGGCGCTTCCTACTTCATTTT
AAAGCCATTTGATATGGAAAACCTTGTAGGTCATATTCGTCAAGTCAGTGGAAACGGCACACAAATCACACATCGATCTT
CATCTATCCAAAGCAGTGTCCTTCGAAACAAACCTGAACCGAAACGTAAAAACTTAGATGCCAGTATTACAACGATTATT
CATGAGATCGGTGTTCCAGCCCATATTAAAGGGTATCTATACTTAAGGGAAGCCATTTCAATGGTTTACAATGACATTGA
ACTTCTTGGGAGCATCACAAAAGTTTTATATCCAGACATTGCAAAGAAATTCAACACCACCGCTAGCAGAGTGGAGCGAG
CGATTCGTCATGCAATTGAAGTAGCTTGGAGCAGAGGAAATATTGATTCCATTTCTTCGCTCTTTGGCTATACTGTGAGT
ATGTCTAAAGCCAAACCAACTAACTCCGAATTCATTGCCATGGTTGCAGACCGCCTGCGTCTAGAGCATAGAGCAAGCTA
A

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(156-259)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

88.764

100

0.891

Multiple sequence alignment