Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   ABVJ71_RS01550 Genome accession   NZ_CP159358
Coordinates   290912..292645 (+) Length   577 a.a.
NCBI ID   WP_353855289.1    Uniprot ID   -
Organism   Bacillus sp. Bos-x628     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 285912..297645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVJ71_RS01525 - 286219..286479 (+) 261 WP_353855284.1 exodeoxyribonuclease VII small subunit -
  ABVJ71_RS01530 - 286469..287359 (+) 891 WP_353855285.1 polyprenyl synthetase family protein -
  ABVJ71_RS01535 dxs 287511..289412 (+) 1902 WP_353855286.1 1-deoxy-D-xylulose-5-phosphate synthase -
  ABVJ71_RS01540 - 289409..290257 (+) 849 WP_353855287.1 TlyA family RNA methyltransferase -
  ABVJ71_RS01545 argR 290426..290875 (+) 450 WP_353855288.1 transcriptional regulator ArgR -
  ABVJ71_RS01550 recN 290912..292645 (+) 1734 WP_353855289.1 DNA repair protein RecN Machinery gene
  ABVJ71_RS01555 spoIVB 292847..294124 (+) 1278 WP_353855290.1 SpoIVB peptidase -
  ABVJ71_RS01560 spo0A 294404..295204 (+) 801 WP_353855291.1 sporulation transcription factor Spo0A Regulator
  ABVJ71_RS01565 - 295609..296709 (+) 1101 WP_353855292.1 Rap family tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 64679.59 Da        Isoelectric Point: 5.1354

>NTDB_id=1013357 ABVJ71_RS01550 WP_353855289.1 290912..292645(+) (recN) [Bacillus sp. Bos-x628]
MLAELTIKNFAIIEELTVSFEKGLTVLTGETGAGKSIMIDAVSLLVGGRGSSEFVRYGEKKAELEGLFLVPEHHPVFALC
EEQGIEAADGMIILHRDINSNGKSICRINGKLVTISLLREVGRLLLDIHGQHDNQLLMEDENHLHLLDQFGEEEIAPALS
QYREVYDQYIKTANKLKKLSENEQEMVQRLDLLQFQFKEIEAAQLEPGEDEKLQEERHQISNYEKIYSSLQNAYNALRNE
QGGLDWVGMASSELEQVSNINDDLKKLSEQVSNSYYLLEDSTFQMRGLLDQLEFDPARLDFIESRLNEMKQLKRKYGSTV
EEILEYAAKIEEEIDHIQNRDSHLQTLKNKLDAISRDALLEALNVSELRKKWAKKLAKHIQAELKDLYMEKSSFDTDFAI
RYAPFGSSDCPFLDGKPVQLGKNGIDQVQFVISTNPGEPMKSLSKVASGGEISRVMLAVKSIFSAKQDVTSIIFDEVDTG
VSGRVAQAIAEKIHKVAAGSQVLCITHLPQVAAMADTHLFISKRSKAGRTLTSVKPLSHEEKINEIGRMIAGVEVTELTK
QHAKELLHQANNVKTTG

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=1013357 ABVJ71_RS01550 WP_353855289.1 290912..292645(+) (recN) [Bacillus sp. Bos-x628]
GTGTTAGCAGAACTAACCATTAAAAACTTTGCAATCATTGAAGAGTTAACGGTTTCATTTGAAAAAGGGCTCACGGTCTT
AACGGGGGAAACAGGTGCAGGGAAATCGATTATGATTGATGCTGTTTCACTTCTCGTAGGAGGAAGAGGATCTTCTGAAT
TTGTTCGATATGGAGAAAAAAAAGCAGAGCTAGAAGGACTTTTTCTTGTGCCGGAACATCATCCAGTTTTTGCCTTGTGT
GAAGAACAAGGGATTGAAGCGGCTGATGGAATGATAATCCTTCACCGCGATATTAATAGCAACGGGAAAAGTATCTGCCG
CATTAATGGCAAGCTAGTGACCATCTCACTTTTAAGAGAAGTAGGGAGGCTGTTGCTTGATATTCATGGGCAGCACGATA
ATCAGCTATTGATGGAGGATGAAAATCATCTGCACTTGCTAGACCAATTCGGGGAAGAAGAAATTGCACCTGCCTTGTCT
CAATATCGTGAAGTATATGATCAATATATCAAGACCGCCAATAAGCTAAAGAAGCTGTCTGAAAATGAACAAGAAATGGT
GCAACGATTAGACTTGTTGCAATTTCAGTTTAAAGAGATTGAAGCGGCTCAATTAGAGCCAGGTGAAGATGAAAAGCTTC
AAGAAGAGCGCCACCAAATTAGTAATTACGAAAAAATCTATTCTTCTCTTCAAAATGCTTATAATGCTTTGCGTAATGAG
CAAGGAGGGCTGGATTGGGTTGGCATGGCTTCAAGTGAGCTTGAGCAGGTATCTAATATCAACGATGATCTAAAGAAGCT
GTCGGAGCAAGTCTCGAATTCCTATTACTTATTGGAGGATTCAACTTTCCAAATGCGCGGACTGCTTGATCAATTGGAAT
TTGACCCAGCACGACTTGATTTTATTGAGTCTAGGCTAAATGAAATGAAGCAGCTGAAGCGAAAATATGGCTCAACTGTC
GAGGAAATTTTAGAATATGCTGCAAAAATCGAAGAAGAGATAGATCACATTCAAAATCGAGACAGCCACTTGCAAACGCT
CAAAAACAAGTTGGATGCGATAAGTCGAGATGCATTACTGGAAGCACTTAACGTATCTGAACTTCGCAAAAAATGGGCCA
AAAAGTTAGCAAAACACATTCAAGCTGAATTAAAGGATTTATATATGGAGAAGTCATCCTTTGATACGGATTTTGCGATT
CGCTATGCGCCTTTTGGCAGCAGTGATTGCCCATTTTTAGATGGAAAACCGGTTCAGCTTGGGAAAAACGGAATAGACCA
AGTGCAATTTGTGATCTCAACAAATCCCGGTGAACCGATGAAATCTTTATCAAAAGTAGCATCAGGCGGAGAAATTTCAC
GTGTTATGCTTGCAGTGAAGAGCATTTTTTCTGCCAAACAAGATGTCACGTCCATTATTTTTGACGAAGTTGATACAGGT
GTCAGCGGCAGAGTAGCACAGGCCATTGCTGAAAAAATTCATAAAGTTGCGGCAGGCTCACAAGTGCTATGCATCACGCA
TTTACCGCAAGTTGCTGCGATGGCTGATACACATCTGTTTATATCTAAACGTTCTAAAGCTGGACGAACATTAACAAGTG
TGAAGCCATTAAGTCACGAAGAGAAAATCAATGAAATCGGGCGAATGATTGCGGGTGTTGAAGTAACCGAGTTGACAAAA
CAGCATGCAAAAGAATTATTACACCAAGCAAATAATGTTAAAACGACAGGGTAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

74.003

100

0.74

Multiple sequence alignment