Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   ABVJ71_RS01365 Genome accession   NZ_CP159358
Coordinates   260139..260474 (-) Length   111 a.a.
NCBI ID   WP_353856507.1    Uniprot ID   -
Organism   Bacillus sp. Bos-x628     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 255139..265474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVJ71_RS01315 comGC 255358..255651 (+) 294 WP_353855251.1 competence type IV pilus major pilin ComGC Machinery gene
  ABVJ71_RS01320 comGD 255644..256090 (+) 447 WP_353855252.1 competence type IV pilus minor pilin ComGD -
  ABVJ71_RS01325 - 256110..256385 (+) 276 WP_353856505.1 type II secretion system protein -
  ABVJ71_RS01330 comGF 256300..256827 (+) 528 WP_353855253.1 competence type IV pilus minor pilin ComGF -
  ABVJ71_RS01335 comGG 256899..257207 (+) 309 WP_353855254.1 competence type IV pilus minor pilin ComGG -
  ABVJ71_RS01340 - 257268..257459 (+) 192 WP_353855255.1 YqzE family protein -
  ABVJ71_RS01345 - 257488..257769 (-) 282 WP_353856506.1 DUF3889 domain-containing protein -
  ABVJ71_RS01350 - 258260..258442 (+) 183 WP_353855256.1 hypothetical protein -
  ABVJ71_RS01355 - 258633..259211 (+) 579 WP_353855257.1 signal peptidase I -
  ABVJ71_RS01360 tasA 259268..260070 (+) 803 Protein_269 biofilm matrix protein TasA -
  ABVJ71_RS01365 sinR 260139..260474 (-) 336 WP_353856507.1 transcriptional regulator SinR Regulator
  ABVJ71_RS01370 - 260534..260671 (-) 138 WP_353855258.1 anti-repressor SinI family protein -
  ABVJ71_RS01375 - 260856..261653 (-) 798 WP_353855259.1 YqhG family protein -
  ABVJ71_RS01380 - 261668..263338 (-) 1671 WP_353856508.1 SNF2-related protein -
  ABVJ71_RS01385 gcvT 263895..264992 (+) 1098 WP_353855260.1 glycine cleavage system aminomethyltransferase GcvT -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12950.50 Da        Isoelectric Point: 4.8062

>NTDB_id=1013356 ABVJ71_RS01365 WP_353856507.1 260139..260474(-) (sinR) [Bacillus sp. Bos-x628]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWKKQQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=1013356 ABVJ71_RS01365 WP_353856507.1 260139..260474(-) (sinR) [Bacillus sp. Bos-x628]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTAAACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAAAAAACA
GCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(74-101)

Helix-turn-helix (HTH_3)

(6-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

93.694

100

0.937

Multiple sequence alignment