Detailed information NTG1013318

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ABUL10_RS12185
• Genome accession: NZ_CP159343
• Coordinates: 2540747..2541547 (-)
• Length: 266 a.a.
• NCBI ID: WP_021467520.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain TY-36
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2535747..2546547

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABUL10_RS12165 (ABUL10_12165)	dksA	2536327..2536782 (-)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-
ABUL10_RS12170 (ABUL10_12170)	sfsA	2536945..2537661 (-)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
ABUL10_RS12175 (ABUL10_12175)	thpR	2537661..2538197 (-)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
ABUL10_RS12180 (ABUL10_12180)	hrpB	2538270..2540699 (+)	2430	WP_085898432.1	ATP-dependent helicase HrpB	-
ABUL10_RS12185 (ABUL10_12185)	pilD	2540747..2541547 (-)	801	WP_021467520.1	A24 family peptidase	Machinery gene
ABUL10_RS12190 (ABUL10_12190)	-	2541544..2542290 (-)	747	WP_117102207.1	type II secretion system protein N	-
ABUL10_RS12195 (ABUL10_12195)	-	2542280..2542765 (-)	486	WP_004145896.1	type II secretion system protein M	-
ABUL10_RS12200 (ABUL10_12200)	gspL	2542758..2543951 (-)	1194	WP_117102206.1	type II secretion system protein GspL	-
ABUL10_RS12205 (ABUL10_12205)	gspK	2543938..2544924 (-)	987	WP_077266059.1	type II secretion system minor pseudopilin GspK	-
ABUL10_RS12210 (ABUL10_12210)	gspJ	2544921..2545517 (-)	597	WP_004145893.1	type II secretion system minor pseudopilin GspJ	-
ABUL10_RS12215 (ABUL10_12215)	gspI	2545514..2545879 (-)	366	WP_353857294.1	type II secretion system minor pseudopilin GspI	-
ABUL10_RS12220 (ABUL10_12220)	gspH	2545876..2546391 (-)	516	WP_004191951.1	type II secretion system minor pseudopilin GspH	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29374.98 Da
• Isoelectric Point: 8.8894

>NTDB_id=1013318 ABUL10_RS12185 WP_021467520.1 2540747..2541547(-) (pilD) [Klebsiella pneumoniae strain TY-36]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWSRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=1013318 ABUL10_RS12185 WP_021467520.1 2540747..2541547(-) (pilD) [Klebsiella pneumoniae strain TY-36]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTAATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGATCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGAGCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425