Detailed information NTG1012989

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: JLZ94_RS23010
• Genome accession: NZ_LR882978
• Coordinates: 4746006..4747031 (+)
• Length: 341 a.a.
• NCBI ID: WP_200999694.1
• Uniprot ID: -
• Organism: Escherichia coli isolate L3_CS7_E2980
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4741006..4752031

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JLZ94_RS23000 (ETECE2980_05022)	rpmE	4743237..4743449 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
JLZ94_RS23005 (ETECE2980_05023)	priA	4743652..4745850 (+)	2199	WP_001356138.1	primosomal protein N'	Machinery gene
JLZ94_RS23010 (ETECE2980_05024)	cytR	4746006..4747031 (+)	1026	WP_200999694.1	DNA-binding transcriptional regulator CytR	Regulator
JLZ94_RS23015 (ETECE2980_05025)	ftsN	4747123..4748082 (+)	960	WP_000068834.1	cell division protein FtsN	-
JLZ94_RS23020 (ETECE2980_05026)	hslV	4748175..4748705 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
JLZ94_RS23025 (ETECE2980_05027)	hslU	4748715..4750046 (+)	1332	WP_001293343.1	HslU--HslV peptidase ATPase subunit	-
JLZ94_RS23030 (ETECE2980_05028)	menA	4750113..4751039 (+)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
JLZ94_RS23035 (ETECE2980_05029)	rraA	4751132..4751617 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
JLZ94_RS23040 (ETECE2980_05030)	zapB	4751702..4751947 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37849.81 Da
• Isoelectric Point: 6.3842

>NTDB_id=1012989 JLZ94_RS23010 WP_200999694.1 4746006..4747031(+) (cytR) [Escherichia coli isolate L3_CS7_E2980]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTATNHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=1012989 JLZ94_RS23010 WP_200999694.1 4746006..4747031(+) (cytR) [Escherichia coli isolate L3_CS7_E2980]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGCATCGAAGTTACGGCGACAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGCTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTCGCACCGGAACTGGAG
CTACCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATCTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGTTACGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628