Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | ABVN19_RS00230 | Genome accession | NZ_CP159259 |
| Coordinates | 40890..41759 (-) | Length | 289 a.a. |
| NCBI ID | WP_028944620.1 | Uniprot ID | - |
| Organism | Pseudomonas vranovensis strain MYb188 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 35890..46759
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABVN19_RS00195 (ABVN19_00195) | - | 36181..36711 (+) | 531 | WP_105642648.1 | dihydrofolate reductase family protein | - |
| ABVN19_RS00200 (ABVN19_00200) | - | 36881..38176 (-) | 1296 | WP_028944615.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| ABVN19_RS00205 (ABVN19_00205) | - | 38261..38434 (-) | 174 | WP_036989987.1 | DUF3094 family protein | - |
| ABVN19_RS00210 (ABVN19_00210) | - | 38604..39233 (-) | 630 | WP_105642661.1 | DUF1780 domain-containing protein | - |
| ABVN19_RS00215 (ABVN19_00215) | - | 39371..40060 (+) | 690 | WP_105642647.1 | energy-coupling factor ABC transporter permease | - |
| ABVN19_RS00220 (ABVN19_00220) | yacG | 40064..40270 (-) | 207 | WP_105642646.1 | DNA gyrase inhibitor YacG | - |
| ABVN19_RS00225 (ABVN19_00225) | coaE | 40267..40890 (-) | 624 | WP_028944619.1 | dephospho-CoA kinase | - |
| ABVN19_RS00230 (ABVN19_00230) | pilD | 40890..41759 (-) | 870 | WP_028944620.1 | A24 family peptidase | Machinery gene |
| ABVN19_RS00235 (ABVN19_00235) | - | 41762..42970 (-) | 1209 | WP_105642645.1 | type II secretion system F family protein | - |
| ABVN19_RS00240 (ABVN19_00240) | - | 43191..43619 (+) | 429 | WP_028944622.1 | pilin | - |
| ABVN19_RS00250 (ABVN19_00250) | - | 43919..45208 (+) | 1290 | WP_105642644.1 | integrase arm-type DNA-binding domain-containing protein | - |
| ABVN19_RS00255 (ABVN19_00255) | - | 45590..45799 (+) | 210 | WP_353632815.1 | pyocin activator PrtN family protein | - |
| ABVN19_RS00260 (ABVN19_00260) | - | 45992..46300 (+) | 309 | WP_105642642.1 | AlpA family phage regulatory protein | - |
| ABVN19_RS00265 (ABVN19_00265) | - | 46297..46632 (+) | 336 | WP_105642641.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 289 a.a. Molecular weight: 31723.91 Da Isoelectric Point: 7.5755
>NTDB_id=1012954 ABVN19_RS00230 WP_028944620.1 40890..41759(-) (pilD) [Pseudomonas vranovensis strain MYb188]
MDLMDSLASQPLLYMCFAVVLGLIVGSFLNVLVHRLPIMLQRQWQAEAREVLGLPAEAEPERYDLCLPASQCPQCGHRIR
PWENIPVLSYLLLRGRCSSCRSAISVRYPLVELGCAMLTGFAAWHLGASAGALALMVLTWGLLAMSLIDIEHRLLPDALV
FPLLWLGLIVNAFDVFVPLEDALWGAVAGYLSLWSVFWLFKLITGKEGMGYGDFKLLALVGAWGGWQVLPLTLLLSSLLG
AVIGVIVLRLKRQKASTPIPFGPYLAIAGWIALLWGGQITTSYLKFSGM
MDLMDSLASQPLLYMCFAVVLGLIVGSFLNVLVHRLPIMLQRQWQAEAREVLGLPAEAEPERYDLCLPASQCPQCGHRIR
PWENIPVLSYLLLRGRCSSCRSAISVRYPLVELGCAMLTGFAAWHLGASAGALALMVLTWGLLAMSLIDIEHRLLPDALV
FPLLWLGLIVNAFDVFVPLEDALWGAVAGYLSLWSVFWLFKLITGKEGMGYGDFKLLALVGAWGGWQVLPLTLLLSSLLG
AVIGVIVLRLKRQKASTPIPFGPYLAIAGWIALLWGGQITTSYLKFSGM
Nucleotide
Download Length: 870 bp
>NTDB_id=1012954 ABVN19_RS00230 WP_028944620.1 40890..41759(-) (pilD) [Pseudomonas vranovensis strain MYb188]
ATGGACCTGATGGATTCGCTGGCCAGCCAGCCGTTGTTGTATATGTGCTTTGCCGTGGTGCTGGGGCTGATCGTCGGCAG
TTTCTTGAATGTGCTGGTGCATCGCTTGCCGATCATGTTGCAGCGCCAGTGGCAGGCCGAAGCACGTGAGGTGCTGGGGC
TGCCCGCCGAGGCCGAGCCTGAACGTTACGATCTGTGCCTGCCCGCCTCCCAGTGCCCGCAGTGCGGGCATCGCATTCGC
CCCTGGGAAAATATTCCTGTACTCAGTTACCTGCTGCTGCGTGGACGCTGTTCCAGTTGTCGCAGCGCCATCAGCGTGCG
CTATCCCCTGGTAGAACTGGGCTGCGCAATGTTGACCGGGTTTGCCGCCTGGCACCTGGGCGCCAGCGCCGGCGCGCTGG
CCTTGATGGTGCTCACTTGGGGCCTGCTGGCCATGAGCCTGATCGACATCGAGCACCGCCTGTTGCCCGATGCGCTGGTG
TTCCCGCTGCTGTGGCTGGGGCTGATCGTCAATGCCTTTGATGTATTCGTGCCCCTGGAGGATGCGCTGTGGGGTGCGGT
TGCCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTCATCACCGGCAAGGAGGGCATGGGCTATGGCGACT
TCAAGTTGCTGGCCCTGGTCGGTGCCTGGGGAGGCTGGCAGGTGTTGCCGCTGACGCTGCTGCTGTCGTCGTTGCTGGGG
GCGGTGATCGGGGTGATTGTATTGCGCCTCAAGCGCCAGAAAGCCAGTACGCCGATTCCCTTTGGTCCTTATCTGGCCAT
TGCGGGGTGGATCGCGCTGCTCTGGGGTGGTCAAATAACCACTTCTTATCTGAAATTCTCTGGAATGTGA
ATGGACCTGATGGATTCGCTGGCCAGCCAGCCGTTGTTGTATATGTGCTTTGCCGTGGTGCTGGGGCTGATCGTCGGCAG
TTTCTTGAATGTGCTGGTGCATCGCTTGCCGATCATGTTGCAGCGCCAGTGGCAGGCCGAAGCACGTGAGGTGCTGGGGC
TGCCCGCCGAGGCCGAGCCTGAACGTTACGATCTGTGCCTGCCCGCCTCCCAGTGCCCGCAGTGCGGGCATCGCATTCGC
CCCTGGGAAAATATTCCTGTACTCAGTTACCTGCTGCTGCGTGGACGCTGTTCCAGTTGTCGCAGCGCCATCAGCGTGCG
CTATCCCCTGGTAGAACTGGGCTGCGCAATGTTGACCGGGTTTGCCGCCTGGCACCTGGGCGCCAGCGCCGGCGCGCTGG
CCTTGATGGTGCTCACTTGGGGCCTGCTGGCCATGAGCCTGATCGACATCGAGCACCGCCTGTTGCCCGATGCGCTGGTG
TTCCCGCTGCTGTGGCTGGGGCTGATCGTCAATGCCTTTGATGTATTCGTGCCCCTGGAGGATGCGCTGTGGGGTGCGGT
TGCCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTCATCACCGGCAAGGAGGGCATGGGCTATGGCGACT
TCAAGTTGCTGGCCCTGGTCGGTGCCTGGGGAGGCTGGCAGGTGTTGCCGCTGACGCTGCTGCTGTCGTCGTTGCTGGGG
GCGGTGATCGGGGTGATTGTATTGCGCCTCAAGCGCCAGAAAGCCAGTACGCCGATTCCCTTTGGTCCTTATCTGGCCAT
TGCGGGGTGGATCGCGCTGCTCTGGGGTGGTCAAATAACCACTTCTTATCTGAAATTCTCTGGAATGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio campbellii strain DS40M4 |
50.352 |
98.27 |
0.495 |
| pilD | Vibrio cholerae strain A1552 |
50.175 |
98.616 |
0.495 |
| pilD | Acinetobacter baumannii D1279779 |
48.905 |
94.81 |
0.464 |
| pilD | Acinetobacter nosocomialis M2 |
48.175 |
94.81 |
0.457 |
| pilD | Neisseria gonorrhoeae MS11 |
48.627 |
88.235 |
0.429 |