Detailed information NTG1012769

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: OGT43_RS20695
• Genome accession: NZ_CP159185
• Coordinates: 4248677..4249477 (+)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain WHY-CZA-R
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4243677..4254477

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OGT43_RS20660 (OGT43_20660)	gspH	4243833..4244348 (+)	516	WP_004191951.1	type II secretion system minor pseudopilin GspH	-
OGT43_RS20665 (OGT43_20665)	gspI	4244345..4244710 (+)	366	WP_029602500.1	type II secretion system minor pseudopilin GspI	-
OGT43_RS20670 (OGT43_20670)	gspJ	4244707..4245303 (+)	597	WP_038807639.1	type II secretion system minor pseudopilin GspJ	-
OGT43_RS20675 (OGT43_20675)	gspK	4245300..4246286 (+)	987	WP_077258272.1	type II secretion system minor pseudopilin GspK	-
OGT43_RS20680 (OGT43_20680)	gspL	4246273..4247466 (+)	1194	WP_048255484.1	type II secretion system protein GspL	-
OGT43_RS20685 (OGT43_20685)	-	4247459..4247944 (+)	486	WP_004151943.1	type II secretion system protein M	-
OGT43_RS20690 (OGT43_20690)	-	4247934..4248680 (+)	747	WP_087833618.1	type II secretion system protein N	-
OGT43_RS20695 (OGT43_20695)	pilD	4248677..4249477 (+)	801	WP_004145898.1	A24 family peptidase	Machinery gene
OGT43_RS20700 (OGT43_20700)	hrpB	4249525..4251954 (-)	2430	WP_048255483.1	ATP-dependent helicase HrpB	-
OGT43_RS20705 (OGT43_20705)	thpR	4252027..4252563 (+)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
OGT43_RS20710 (OGT43_20710)	sfsA	4252563..4253279 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
OGT43_RS20715 (OGT43_20715)	dksA	4253442..4253897 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=1012769 OGT43_RS20695 WP_004145898.1 4248677..4249477(+) (pilD) [Klebsiella pneumoniae strain WHY-CZA-R]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=1012769 OGT43_RS20695 WP_004145898.1 4248677..4249477(+) (pilD) [Klebsiella pneumoniae strain WHY-CZA-R]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGATCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425