Detailed information NTG1012595

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ABU994_RS03300
• Genome accession: NZ_CP159153
• Coordinates: 680287..681087 (+)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain 10035210-3
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 675287..686087

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABU994_RS03265 (ABU994_03265)	gspH	675443..675958 (+)	516	WP_004191951.1	type II secretion system minor pseudopilin GspH	-
ABU994_RS03270 (ABU994_03270)	gspI	675955..676320 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
ABU994_RS03275 (ABU994_03275)	gspJ	676317..676913 (+)	597	WP_004145893.1	type II secretion system minor pseudopilin GspJ	-
ABU994_RS03280 (ABU994_03280)	gspK	676910..677896 (+)	987	WP_004213439.1	type II secretion system minor pseudopilin GspK	-
ABU994_RS03285 (ABU994_03285)	gspL	677883..679076 (+)	1194	WP_080899779.1	type II secretion system protein GspL	-
ABU994_RS03290 (ABU994_03290)	-	679069..679554 (+)	486	WP_004151943.1	type II secretion system protein M	-
ABU994_RS03295 (ABU994_03295)	-	679544..680290 (+)	747	WP_004145897.1	type II secretion system protein N	-
ABU994_RS03300 (ABU994_03300)	pilD	680287..681087 (+)	801	WP_004145898.1	A24 family peptidase	Machinery gene
ABU994_RS03305 (ABU994_03305)	hrpB	681135..683564 (-)	2430	WP_115664746.1	ATP-dependent helicase HrpB	-
ABU994_RS03310 (ABU994_03310)	thpR	683637..684173 (+)	537	WP_032416682.1	RNA 2',3'-cyclic phosphodiesterase	-
ABU994_RS03315 (ABU994_03315)	sfsA	684173..684889 (+)	717	WP_130958529.1	DNA/RNA nuclease SfsA	-
ABU994_RS03320 (ABU994_03320)	dksA	685052..685507 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=1012595 ABU994_RS03300 WP_004145898.1 680287..681087(+) (pilD) [Klebsiella pneumoniae strain 10035210-3]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=1012595 ABU994_RS03300 WP_004145898.1 680287..681087(+) (pilD) [Klebsiella pneumoniae strain 10035210-3]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGATCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGAGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425