Detailed information NTG1012507

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ABU985_RS27180
• Genome accession: NZ_CP159144
• Coordinates: 5369845..5370645 (-)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain 10034940-3
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5364845..5375645

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABU985_RS27160 (ABU985_27165)	dksA	5365425..5365880 (-)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-
ABU985_RS27165 (ABU985_27170)	sfsA	5366043..5366759 (-)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
ABU985_RS27170 (ABU985_27175)	thpR	5366759..5367295 (-)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
ABU985_RS27175 (ABU985_27180)	hrpB	5367368..5369797 (+)	2430	WP_012737409.1	ATP-dependent helicase HrpB	-
ABU985_RS27180 (ABU985_27185)	pilD	5369845..5370645 (-)	801	WP_004145898.1	A24 family peptidase	Machinery gene
ABU985_RS27185 (ABU985_27190)	-	5370642..5371388 (-)	747	WP_012737410.1	type II secretion system protein N	-
ABU985_RS27190 (ABU985_27195)	-	5371378..5371863 (-)	486	WP_012737411.1	type II secretion system protein M	-
ABU985_RS27195 (ABU985_27200)	gspL	5371856..5373049 (-)	1194	WP_012737412.1	type II secretion system protein GspL	-
ABU985_RS27200 (ABU985_27205)	gspK	5373036..5374022 (-)	987	WP_077250502.1	type II secretion system minor pseudopilin GspK	-
ABU985_RS27205 (ABU985_27210)	gspJ	5374019..5374615 (-)	597	WP_012737414.1	type II secretion system minor pseudopilin GspJ	-
ABU985_RS27210 (ABU985_27215)	gspI	5374612..5374977 (-)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
ABU985_RS27215 (ABU985_27220)	gspH	5374974..5375489 (-)	516	WP_004183045.1	type II secretion system minor pseudopilin GspH	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=1012507 ABU985_RS27180 WP_004145898.1 5369845..5370645(-) (pilD) [Klebsiella pneumoniae strain 10034940-3]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=1012507 ABU985_RS27180 WP_004145898.1 5369845..5370645(-) (pilD) [Klebsiella pneumoniae strain 10034940-3]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGATCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425