Detailed information NTG1012414

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ABU964_RS20620
• Genome accession: NZ_CP159126
• Coordinates: 4221770..4222570 (-)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain 158274-1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4216770..4227570

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABU964_RS20600 (ABU964_20600)	dksA	4217350..4217805 (-)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-
ABU964_RS20605 (ABU964_20605)	sfsA	4217968..4218684 (-)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
ABU964_RS20610 (ABU964_20610)	thpR	4218684..4219220 (-)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
ABU964_RS20615 (ABU964_20615)	hrpB	4219293..4221722 (+)	2430	WP_064145607.1	ATP-dependent helicase HrpB	-
ABU964_RS20620 (ABU964_20620)	pilD	4221770..4222570 (-)	801	WP_004145898.1	A24 family peptidase	Machinery gene
ABU964_RS20625 (ABU964_20625)	-	4222567..4223313 (-)	747	WP_004145897.1	type II secretion system protein N	-
ABU964_RS20630 (ABU964_20630)	-	4223303..4223788 (-)	486	WP_023312675.1	type II secretion system protein M	-
ABU964_RS20635 (ABU964_20635)	gspL	4223781..4224977 (-)	1197	WP_064145608.1	type II secretion system protein GspL	-
ABU964_RS20640 (ABU964_20640)	gspK	4224964..4225950 (-)	987	WP_004178610.1	type II secretion system minor pseudopilin GspK	-
ABU964_RS20645 (ABU964_20645)	gspJ	4225947..4226543 (-)	597	WP_012737414.1	type II secretion system minor pseudopilin GspJ	-
ABU964_RS20650 (ABU964_20650)	gspI	4226540..4226905 (-)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
ABU964_RS20655 (ABU964_20655)	gspH	4226902..4227417 (-)	516	WP_021313445.1	type II secretion system minor pseudopilin GspH	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=1012414 ABU964_RS20620 WP_004145898.1 4221770..4222570(-) (pilD) [Klebsiella pneumoniae strain 158274-1]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=1012414 ABU964_RS20620 WP_004145898.1 4221770..4222570(-) (pilD) [Klebsiella pneumoniae strain 158274-1]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGATCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425